Locus 4131

Sequence ID 2R_DroMel_CAF1
Location 13,578,894 – 13,578,987
Length 93
Max. P 0.636921
window6652

overview

Window 2

Location 13,578,894 – 13,578,987
Length 93
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 82.57
Mean single sequence MFE -30.24
Consensus MFE -20.46
Energy contribution -20.78
Covariance contribution 0.32
Combinations/Pair 1.26
Mean z-score -1.75
Structure conservation index 0.68
SVM decision value 0.21
SVM RNA-class probability 0.636921
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13578894 93 - 20766785
UCGAGGG------CGGCCAUACGUCAUGGCCAGUUGUCAAUUGGCCGGAACGAUUUAUGGCCCAGUUUAAUCAGCAUCCGGCCGCCA-UAAAAUGCGAAA
(((..((------(((((...(((..((((((((.....))))))))..)))......((....(((.....)))..))))))))).-.......))).. ( -33.20)
>DroSec_CAF1 131969 93 - 1
UCGAGGG------CGGCCAUACGUCAUAGCCAGUUGUCAAUUGGCCGGAACGAUUUAUGGCCCAGUUUAAUCAGCAUCCGGCCGCCA-UAAAAUGCGAAA
(((..((------(((((....((((((((((((.....))))))((...))...))))))...(((.....)))....))))))).-.......))).. ( -27.90)
>DroSim_CAF1 130346 93 - 1
UCGAGGG------CGGCCAUACGUCAUGGCCAGUUGUCAAUUGGCCGGAACGAUUUAUGGCCCAGUUUAAUCAGCAUCCGGCCGCCA-UAAAAUGCGAAA
(((..((------(((((...(((..((((((((.....))))))))..)))......((....(((.....)))..))))))))).-.......))).. ( -33.20)
>DroYak_CAF1 131791 99 - 1
UCGAGGGUGCGACUUGCCAUACGUCAUGGCCAGUUGUCAAUGGGCCGGAACGAUUUAUGGCCCAGUUUAAUCAGCAUCCGGCCACCA-UAAAAUGCGAAA
(((.((((((((((.(((((.....))))).)))).....(((((((..........))))))).........))))))((...)).-.......))).. ( -33.70)
>DroAna_CAF1 125064 92 - 1
UUU-UGG------CGGUAAUACGUCAUAGCUGUCUGUCAAA-AGCCACAGCGAUUUAUGGCCUGGCCUAAUCUGCGUCCGGCUAAUUUCAAAAUUUGAAA
...-(((------((......)))))..(((((((......-))..)))))......(((((.((((......).))).))))).(((((.....))))) ( -23.20)
>consensus
UCGAGGG______CGGCCAUACGUCAUGGCCAGUUGUCAAUUGGCCGGAACGAUUUAUGGCCCAGUUUAAUCAGCAUCCGGCCGCCA_UAAAAUGCGAAA
(((...........((((((((((..((((((((.....))))))))..)))...)))))))...........((.....)).............))).. (-20.46 = -20.78 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:34 2006