Locus 413

Sequence ID 2R_DroMel_CAF1
Location 2,436,350 – 2,436,463
Length 113
Max. P 0.746765
window808

overview

Window 8

Location 2,436,350 – 2,436,463
Length 113
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 78.47
Mean single sequence MFE -33.16
Consensus MFE -19.85
Energy contribution -20.77
Covariance contribution 0.92
Combinations/Pair 1.28
Mean z-score -1.73
Structure conservation index 0.60
SVM decision value 0.46
SVM RNA-class probability 0.746765
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2436350 113 - 20766785
CUGUGCCGAAGAACAAGUCCAAUGUGUUUUGGUAGUAUAACGCAGCCAGCUGUUCUUUAGGCUCUUGUUUGAUUCCGGCAAUAGACUCCAAAACUUGGCUAAAA-CGG---AAGA--CA
..(.(((((((((((.((....((((((..........))))))....)))))))))).))).).((((...(((((....(((...(((.....))))))...-)))---))))--)) ( -27.40)
>DroVir_CAF1 67809 118 - 1
AGCCGCUAAAGAACAAGUCCAACGUGUUUUGAUAGUAAAGCUCAGCCAGCUGCUCCUUGGGCUGCUGUUUGAUGCCCGCAAUUGCCUCCAAGACUUGACUGAAA-UGUUGCGAGACUCA
...(((.........((((......((((((........((((((.((((.(((.....))).)))).)))).))..((....))...))))))..))))....-....)))....... ( -27.93)
>DroPse_CAF1 43854 113 - 1
UUCUGCUGAAGAACACAUCCAAAGUGUUUUGAUAGUAGAUCUCGGCCAGCUUCUCCUUGGGCUCCUGCUUAAUGCCCGCAAUGGCCUCGAGAACUUGGCUGAAA-UGA---AAAA--UA
.(((((((.(((((((.......)))))))..)))))))..((((((((.(((((...(((((..(((.........)))..))))).))))).))))))))..-...---....--.. ( -41.30)
>DroGri_CAF1 21702 116 - 1
AUUUGCUAAAGAACAGAUCUAACGUGUUCUGAUAGUAAAUCUCGGCCAGCUUCUCCUUGGGCUCCUGUCUAAUGCCCGCAAUCGCCUCCAGUACUUGGCUGAAAGUGCAGUAAUC--C-
((((((((.((((((...(....)))))))..)))))))).((((((((.........((((...........))))((....)).........)))))))).............--.- ( -29.40)
>DroYak_CAF1 48376 113 - 1
CUUUGCUGAAGAACAAGUCCAAUGUGUUUUGGUAGUAUAACUCUGCCAGCUCUUCUUUGGGCUCCUCUUUGAUUCCGGCAAUGGCCUCCAAAACUUGGCUGAAA-CGG---AAAA--CA
.......(((((...(((((((...(..(((((((.......)))))))..)....)))))))..)))))..(((((.....((((..........))))....-)))---))..--.. ( -31.60)
>DroPer_CAF1 43434 113 - 1
UUCUGCUGAAGAACACAUUCAAAGUGUUUUGAUAGUAGAUCUCGGCCAGCUUCUCCUUGGGCUCCUGCUUAAUGCCCGCAAUGGCCUCGAGAACUUGGCUGAAA-UGA---AAAA--UA
.(((((((.(((((((.......)))))))..)))))))..((((((((.(((((...(((((..(((.........)))..))))).))))).))))))))..-...---....--.. ( -41.30)
>consensus
AUCUGCUGAAGAACAAAUCCAAAGUGUUUUGAUAGUAAAUCUCGGCCAGCUUCUCCUUGGGCUCCUGUUUAAUGCCCGCAAUGGCCUCCAAAACUUGGCUGAAA_UGA___AAAA__CA
.(((((((.((((((.........))))))..)))))))..((((((((.........(((((..(((.........)))..))))).......))))))))................. (-19.85 = -20.77 +   0.92) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:00 2006