Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,559,581 – 13,559,701 |
Length | 120 |
Max. P | 0.717620 |
Location | 13,559,581 – 13,559,701 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.00 |
Mean single sequence MFE | -47.62 |
Consensus MFE | -37.98 |
Energy contribution | -38.86 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.06 |
Mean z-score | -1.58 |
Structure conservation index | 0.80 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717620 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13559581 120 + 20766785 CUGCUGCUGCUCCGCCUGGGCGGUCAAAUUGGCGAUCUGGGCAUUGGCGGUGGUGAUGCAGUCCUGAUAGGAACUCGAGAAAGUGGCAGCCACUUGAUUCAGCAUAGGCAUGUAUAAGUU ..((..(((((..(((..((..(((.....)))..))..)))...)))))..)).((((..(((.....)))....(((.((((((...))))))..))).))))............... ( -38.60) >DroSec_CAF1 107152 120 + 1 CUGCUGCUGCUCCGCCUGGGCGGUCAGAUUGGCGGUCUGGGCAUUGGCGGUGGUGAUGCAGUCCUGAUAGGAACUAGAGAAAGUGGCAGCCACUUGGUUCAGCAUGGGCAUGUAUAGGUU ..((..(((((..(((..(((.(((.....))).)))..)))...)))))..)).(((((((((((....((((((.....(((((...)))))))))))..)).)))).)))))..... ( -49.90) >DroSim_CAF1 111340 120 + 1 CUGCUGCUGCUCCGCCUGGGCGGUCAGAUUGGCGGUCUGGGCAUUGGCGGUGGUGAUGCAGUCCUGAUAGGAACUCGAGAAAGUGGCAGCCACUUGGUUCAGCAUGGGCAUGUAUAUGUU ..((..(((((..(((..(((.(((.....))).)))..)))...)))))..)).(((((((((((....(((((.....((((((...)))))))))))..)).)))).)))))..... ( -49.80) >DroEre_CAF1 108116 120 + 1 CUGCUGCUCUUCCGCCUGGGCGGUCAGAUUGGCGGUCUGGGCAUUGGCGGUGUUGAUGCAGUCCUGAUAGGAGGACGAGAAAGUGGCCGCCAGUUGGUUCAGCAGGGGCAUGUAAGUGUU ((((((..((.((((....))))...(((((((((((...((((..((...))..)))).(((((......)))))........)))))))))))))..)))))).(((((....))))) ( -52.90) >DroYak_CAF1 112981 120 + 1 CUGCUGCUGCUCCGCCUGGGCGGUCAGAUUGGCGGUCUGGGCAUUGGCGGUGUUGAUGCAUUCCUGAUAGUUGGCCGAGAAGGUGGCAGCCACUUGGUUCAGCAUGGGCAUGUAUAUGUU .....((((((..(((..(((.(((.....))).)))..)))...))))))....((((((.(((.((.((((((((((..(((....))).))))).)))))))))).))))))..... ( -46.90) >consensus CUGCUGCUGCUCCGCCUGGGCGGUCAGAUUGGCGGUCUGGGCAUUGGCGGUGGUGAUGCAGUCCUGAUAGGAACUCGAGAAAGUGGCAGCCACUUGGUUCAGCAUGGGCAUGUAUAUGUU .((((((((((..(((..(((.(((.....))).)))..)))...))))))....((((..(((.....)))....(((.((((((...))))))..))).)))).)))).......... (-37.98 = -38.86 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:30 2006