Locus 4126

Sequence ID 2R_DroMel_CAF1
Location 13,545,360 – 13,545,457
Length 97
Max. P 0.500000
window6646

overview

Window 6

Location 13,545,360 – 13,545,457
Length 97
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 80.85
Mean single sequence MFE -27.18
Consensus MFE -15.26
Energy contribution -16.71
Covariance contribution 1.45
Combinations/Pair 1.12
Mean z-score -1.84
Structure conservation index 0.56
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13545360 97 + 20766785
GA---CCCGAGUGGGAGUGGAGCGGCCAUGAUAAAUGACAUGUUUCAUUUGACAUUUUAACAAAGUGUUGAAUUUUUGCUGCUUA--CU---GCUAGCUCGUUGG
..---(((((((((.((((.((((((((((........))))....(((..((((((.....))))))..)))....))))))))--))---.))).))))..)) ( -30.20)
>DroGri_CAF1 72930 90 + 1
----------GCCA-----GUGCUGGCAUGAUAAAUGACAUGUUUCAUUUGACAUUUUAACAAAGUGUUGAAUUUCUGCUGCUUCAAAUGCUUUUUGUGACAUGG
----------((((-----....))))...........((((((.((((..((((((.....))))))..))........((.......))....)).)))))). ( -20.20)
>DroSim_CAF1 97177 100 + 1
GA---CUCGAGUGGGAGUGGAGCGGCCAUGAUAAAUGACAUGUUUCAUUUGACAUUUUAACAAAGUGUUGAAUUUUUGCUGCUUA--CUGCUGCUAGCUCGUUGG
..---..(((((((.((..(((((((((((........))))....(((..((((((.....))))))..)))....))))))..--)..)).))).)))).... ( -30.30)
>DroEre_CAF1 94515 97 + 1
GA---CUCGAGUGGGAGCGGAGCGGCCAUGAUAAAUGACAUGUUUCAUUUGACAUUUUAACAAAGUGUUGAAUUUUUGCUGCUUA--CU---GCAAGCUCGUUGG
..---..(((((....((((((((((((((........))))....(((..((((((.....))))))..)))....))))))..--))---))..))))).... ( -28.10)
>DroYak_CAF1 98760 97 + 1
GA---UUCGAGUGGGAGUGCUGCGGCCAUGAUAAAUGACAUGUUUCAUUUGACAUUUUAACAAAGUGUUGAAUUUUUGCUGCUUA--CU---GCCAGCUCGUUGG
..---..(((((((.((((..(((((((((........))))....(((..((((((.....))))))..)))....))))).))--))---.))).)))).... ( -30.50)
>DroAna_CAF1 95304 97 + 1
AGCUCCUCGAGUGGUA---GAAUGGCCAUGAUAAAUGACAUGUUUCAUUUGACAUUUUAACAAAGUGUUGAAUUUUUGCUGCUUA--CU---AUGUGAGCGUAAA
.(((((..(((..(((---(((....((((........))))....(((..((((((.....))))))..)))))))))..))).--..---..).))))..... ( -23.80)
>consensus
GA___CUCGAGUGGGAGUGGAGCGGCCAUGAUAAAUGACAUGUUUCAUUUGACAUUUUAACAAAGUGUUGAAUUUUUGCUGCUUA__CU___GCUAGCUCGUUGG
.......(((((.......(((((((((((........))))....(((..((((((.....))))))..)))....)))))))............))))).... (-15.26 = -16.71 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:28 2006