Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,536,708 – 13,536,800 |
Length | 92 |
Max. P | 0.817885 |
Location | 13,536,708 – 13,536,800 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 83.59 |
Mean single sequence MFE | -31.56 |
Consensus MFE | -20.26 |
Energy contribution | -21.58 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.24 |
Mean z-score | -2.23 |
Structure conservation index | 0.64 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13536708 92 + 20766785 AGGUCCAUGGUGGGGAAACACCACCACUCAAGGUCCAUGGUGGGGAAACACCACUACUCAAGGUCCAUGGUGGGGAAACACCACUACUCAAG .((.((.(((((((....).))))))...........(((((((....).)))))).....)).)).(((((((....).))))))...... ( -39.70) >DroSim_CAF1 88314 92 + 1 AGGUCCAUGGUGGGGCAAUAACUCUACUCAAGGUCCAUGGUGGGGAAACACCACUACUCAAGGUCCAUGGUGGGGAAACACUACUACUCAAG .((.((.((((((((......)))))).)).)).)).(((((((....).))))))...........(((((((....).))))))...... ( -32.60) >DroEre_CAF1 85542 92 + 1 AGGUCCAUGGUGGGGAAACAAUUCAACAGAAGGUCCAUGGUGGGGAAACAACUCAACCGAAGGUCCAUGGUGGGGAAACAACUCAACCGAAG .(((((((.(((((((.....(((....)))..))).(((((((.......))).)))).....)))).))))(....)......))).... ( -26.00) >DroYak_CAF1 88583 92 + 1 AGGUCCAUGGUGGGGAAACAACUCGACGGAUGGUCCAUGGUGGGGAAACAACUCUACUCAAGGUCCCUGGUGGGGAAACAACUCUACUCAAG .((.((((.((.(((......))).)).).))).)).((((((((......(((((((..((....)))))))))......)))))).)).. ( -27.40) >DroAna_CAF1 86266 92 + 1 AGGACCCUGGUGGGGCAACAACUCUACCGAAGGACCCUGGUGGGGCAACAACUCUACCGAAGGACCCUGGUGGGGCAACAACUCUACUUCUG .(((....(((((((......(((((((..(((..((((((((((......)))))))..)))..))))))))))......)))))))))). ( -32.10) >consensus AGGUCCAUGGUGGGGAAACAACUCUACUGAAGGUCCAUGGUGGGGAAACAACUCUACUCAAGGUCCAUGGUGGGGAAACAACUCUACUCAAG ........(((((((......(((((((...((.((..(((((((......)))))))...)).))..)))))))......))))))).... (-20.26 = -21.58 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:21 2006