Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,535,736 – 13,535,838 |
Length | 102 |
Max. P | 0.632752 |
Location | 13,535,736 – 13,535,838 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -36.82 |
Consensus MFE | -26.00 |
Energy contribution | -25.70 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.42 |
Mean z-score | -1.64 |
Structure conservation index | 0.71 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13535736 102 - 20766785 GGCUGACUCUGGGCGAUGCAAUUGGCCAGGGCGAUGGAAGCUGCAUUCAGCUUGAUCACUGCCUUUUCUACUUCACGGAAAAUGCAGGCACUGUAACGGCGA .((((..(((((.((((...)))).)))))(((((.((.((((....)))))).))).((((.((((((.......)))))).)))))).......)))).. ( -34.80) >DroSec_CAF1 83958 102 - 1 GGCUGACUCUGGGCGAUGCAAUUUGCCAGAGCGAUGGAAGCUGCAUUCAGCUUGAUCACUGCCUUUUCCACUUCUCGGAAAAUGCAGGCUCUGUAACGGCGA .((((......(((((......)))))((((((((.((.((((....)))))).))).((((.((((((.......)))))).)))))))))....)))).. ( -40.30) >DroSim_CAF1 86915 102 - 1 GGCUGACUCUGGGCGAUGCAAUUGGCCAGAGCGAUGGAAGCUGCAUUCAGCUUGAUCACUGCCUUUUCCACUUCACGGAAAAUGCAGGCGCUGUAACGGCGA .((((..(((((.((((...)))).)))))(((((.((.((((....)))))).))).((((.((((((.......)))))).)))))).......)))).. ( -38.30) >DroEre_CAF1 84531 102 - 1 GGCUGACUCUGGGCGAUGCAAUUGGCCAGAGAGAUGGAAGCUGCAUUCAGCUUGAUCAGUGCCUUUUCCACUUCACGGAGAAUGCAGGCACUGCGGCGGCGA .((((.((((((.((((...)))).))))))......((((((....))))))...(((((((((((((.......)))))....))))))))))))..... ( -40.70) >DroYak_CAF1 87413 102 - 1 GGCUGACUCUGGGCGAUGCAAUUGGCCAGAGAGAUGGAAGCUGCAUUCAGCUUGAUCACUGCCUUUUCCACUUCGCGGAAAAUGCAGGCAUUGCGGCGGCGA .((((.((((((.((((...)))).)))))).((((.((((((....)))))).....((((.((((((.......)))))).)))).)))).))))..... ( -38.90) >DroAna_CAF1 85327 94 - 1 --------CUGGGCAAGGCAACUGGCCAGACUUUUUUCUGCGGCAUCCAGUCUCAAGACCGCCUUUUCGACUUCACGCAGGUAACAAGCCCACUUGCGGCGG --------((((.((.(....))).)))).......((((.(((.....))).).)))(((((.....(....)..((((((.........))))))))))) ( -27.90) >consensus GGCUGACUCUGGGCGAUGCAAUUGGCCAGAGCGAUGGAAGCUGCAUUCAGCUUGAUCACUGCCUUUUCCACUUCACGGAAAAUGCAGGCACUGUAACGGCGA ......((((((.(((.....))).)))))).(((.((.((((....)))))).)))..((((((((((.......))))))(((((...)))))..)))). (-26.00 = -25.70 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:17 2006