Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,535,112 – 13,535,224 |
Length | 112 |
Max. P | 0.648599 |
Location | 13,535,112 – 13,535,224 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 78.48 |
Mean single sequence MFE | -35.90 |
Consensus MFE | -24.49 |
Energy contribution | -24.69 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.09 |
Mean z-score | -1.26 |
Structure conservation index | 0.68 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648599 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13535112 112 - 20766785 UUGGCAUU--CUCACCUGAGCACCGACGAGCAGCAGACAAACUGCUAAAAUUUUGCAGGGAACCUCCAUCAUGGCGGUUCAAUUCGUUUCUGAGGUGGCUUCGCUGGCAGGUGA ........--.(((((((..((.(((.(.((..((((....((((.........)))).(((((.((.....)).)))))........))))..))..).))).)).))))))) ( -36.90) >DroPse_CAF1 80359 112 - 1 --GGCCUUCUCUUACCUGAGCGCUGACGAGCAGCGAGCACACUGCUAAUAUUUUGCAGAGAACCUCCAUCAGGGCGGUUCAAGUUAUUUCUGACAGUCUGCCAGUAUCAGCUGA --.((...(((......)))(((((.....))))).)).....(((.(((((..((((((((((.((.....)).)))))..((((....))))..))))).))))).)))... ( -33.30) >DroEre_CAF1 83925 112 - 1 UUGGUAUG--CUCACCUGAGCGCCGACGAGCAGCAGACACACUGCUAAAAUUUUGCAGGGAACCUCCAUCAUGGCGGUUCAAAUCGUUUCUGAGGUGGCUUCGCUGGCAGGUGA .......(--(((....))))((((.(((((..((((.((.((((.........)))).(((((.((.....)).))))).....)).)))).....)).))).))))...... ( -39.30) >DroYak_CAF1 86794 112 - 1 UUGGCAUU--CUCACCUGAGCGCCGACGAGCAGCAGACAAACUGCUAAAAUUUUGCAGGGAACCUCCAUCAUGGCGGUUCAGUUCGUUUCUGAGUUCGCUUCGCUGGCAGGUGA ........--.(((((((((((..(.(((((..((((....((((.........)))).(((((.((.....)).)))))........)))).))))))..))))..))))))) ( -39.80) >DroAna_CAF1 84732 111 - 1 CCUGAAUA--UUUACCUGGGCACUGACUAGCAGUGAGCACACUAAUAAAAUUUUGCAGAGAACCUCCAUCUUGGGGGUUCGGUUCGUUUCUGU-UCGAUUUCAAUGGCAGGUGA ........--.(((((((..(((((.....)))))......(((.(.(((((..(((((((((((((.....))))))))........)))))-..))))).).)))))))))) ( -32.80) >DroPer_CAF1 88654 112 - 1 --GGCCUUCUCUUACCUGAGCGCUGACGAGCAGCGAGCACACUGCUAAUAUUUUGCAGAGAACCUCCAUCAGGGCGGUUCAAGUUAUUUCUGACAGUCUGCCAGUAUCAGCUGA --.((...(((......)))(((((.....))))).)).....(((.(((((..((((((((((.((.....)).)))))..((((....))))..))))).))))).)))... ( -33.30) >consensus UUGGCAUU__CUCACCUGAGCGCCGACGAGCAGCAAACACACUGCUAAAAUUUUGCAGAGAACCUCCAUCAUGGCGGUUCAAUUCGUUUCUGAGAUGGCUUCACUGGCAGGUGA ...........(((((((.(((......(((((........))))).......)))...(((((.((.....)).)))))...........................))))))) (-24.49 = -24.69 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:16 2006