Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,524,407 – 13,524,508 |
Length | 101 |
Max. P | 0.994914 |
Location | 13,524,407 – 13,524,508 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 90.03 |
Mean single sequence MFE | -28.92 |
Consensus MFE | -26.62 |
Energy contribution | -26.97 |
Covariance contribution | 0.35 |
Combinations/Pair | 1.15 |
Mean z-score | -2.29 |
Structure conservation index | 0.92 |
SVM decision value | 2.52 |
SVM RNA-class probability | 0.994914 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13524407 101 - 20766785 AUCUGCGGCUGCGGGUACAUAAAAUAAAAGCAAGGCACCCAGCAAGUGUAACUUUUUAUGUGCUCAGGCAACAGAAAUCGCCGGCCAUUUAUACGGAUACU .((((..(((..((((((((((((.....(((..((.....))...)))....)))))))))))).)))..)))).....(((..........)))..... ( -30.90) >DroSec_CAF1 72784 101 - 1 AUCUGCGGCUGCGGGUACAUAAAAUAAAAGCAAGGCACCCAGCAAGUGUAACUUUUUAUGCGCUCAGGCAACAGAAAUCGCCGGCCAUUUAUACGGAUACU .((((..(((..(((..(((((((.....(((..((.....))...)))....)))))))..))).)))..)))).....(((..........)))..... ( -27.10) >DroSim_CAF1 75635 101 - 1 AUCUGCGGCUGCGGGUACAUAAAAUAAAAGCAAGGCACCCAGCAAGUGUAACUUUUUAUGUGCUCAGGCAACAGAAAUCGCCGGCCAUUUAUACGGAUACU .((((..(((..((((((((((((.....(((..((.....))...)))....)))))))))))).)))..)))).....(((..........)))..... ( -30.90) >DroEre_CAF1 73250 101 - 1 AUCUGCGGCUGCGGGUACAUAAAAUAAAAGCAAGGCACCCAGCAAGUGUAACUUUUUAUGUGCUCAGGCAACAGAAAUCGCCGCCCAUUUAUACGGAUACU ....(((((...((((((((((((.....(((..((.....))...)))....)))))))))))).(....).......)))))((........))..... ( -30.00) >DroYak_CAF1 75711 94 - 1 AUCUGCGGCUGCGGGUACAUAAAAUAAAAGCAAGG-------CAAGUGUAACUUUUUAUGUGCCCAGGCAACAGAAAUCGCCGGCAAUUUAUACGGAUACU .((((..(((..((((((((((((.....(((...-------....)))....)))))))))))).)))..)))).....(((..........)))..... ( -29.80) >DroAna_CAF1 73373 96 - 1 AUCUGCGGCUGCGGGUACAUA-----AAAGUAAGGGUCUCUCCAAGUGUAACUUUUUUCAUGCCCCGGCAACAGAAAUUGCUGGCAAUUUAUACAGAUACA .((((..((((.(((((...(-----(((((...((.....)).......))))))....)))))))))..))))(((((....)))))............ ( -24.80) >consensus AUCUGCGGCUGCGGGUACAUAAAAUAAAAGCAAGGCACCCAGCAAGUGUAACUUUUUAUGUGCUCAGGCAACAGAAAUCGCCGGCCAUUUAUACGGAUACU .((((..(((..((((((((((((.....(((..((.....))...)))....)))))))))))).)))..)))).....(((..........)))..... (-26.62 = -26.97 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:09 2006