| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,523,561 – 13,523,659 |
| Length | 98 |
| Max. P | 0.576538 |
| Location | 13,523,561 – 13,523,659 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 82.76 |
| Mean single sequence MFE | -30.30 |
| Consensus MFE | -20.40 |
| Energy contribution | -22.15 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.576538 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13523561 98 + 20766785 UC--UCAUUUUGUGCAGCCAUUUCGCCGAG--------UGACGAAAGCACCUUCGUCACGCGUCUCGGCUCUAAUCGGGUGCAAACAAAGCAUCAGCAAACCGCUUCA ..--...(((((((((.(((((..((((((--------(((((((......)))))))).....)))))...))).)).)))..))))))....(((.....)))... ( -29.50) >DroSec_CAF1 71934 98 + 1 UC--UCAUUUUGUGCAGCCAUUUCGCCGAG--------UGACGAAAGCACCUUCGUCACGCAUCUCGGCUCCAUUCGGGUGCAAACAAAGCGCCAGCAAACCGCUUCA ..--........(((.........((((((--------(((((((......)))))))).....)))))........(((((.......))))).))).......... ( -29.40) >DroSim_CAF1 74794 98 + 1 UC--UCAUUUUGUGCAGCCAUUUCGCCGAG--------UGACGAAAGCACCUUCGUCACGCAUCUCGGCUAAAUUCGGGUGCAAACAAAGCGCCAGCAAACCGCUUCA ..--........((((.((((((.((((((--------(((((((......)))))))).....))))).))))..)).))))....(((((.........))))).. ( -30.60) >DroEre_CAF1 72487 98 + 1 UC--UCAUUUUGUGCAGCCAGUUCGCCGAG--------UGACGAAUGCACCUUCGUCACGCGUCUCGGCUCCAUUCGGGCGCAAACAAAGCGCCAGCAAACCGCUUCA ..--.......(((.((((((..(((...(--------(((((((......))))))))))).)).)))).)))...(((((.......)))))(((.....)))... ( -33.40) >DroYak_CAF1 74981 100 + 1 UCUUUCGUUUUGUGCAGCCAUUUCGCCGAG--------UGACGAAAGCGCCUUCGUCACGCGUCUCGGCACCAUUCGGCGGCAAACAAAGCGCCAGCAAACCGCUUCA .....((((((((...(((.....((((((--------(((((((......))))))))((......)).....))))))))..))))))))..(((.....)))... ( -34.80) >DroAna_CAF1 72788 98 + 1 CC--UCGC-UUGUGCAGCCAUUU-GCCGAACUCAACCAUGUGGACAUCGGCUUUG------AUGUCGUGUCGCCUCGUGGACAAACAAAGAGCCAGCAAACCGCUUCA ..--..((-....))(((..(((-((.........((....)).....((((((.------.(((..((((........)))).))).)))))).)))))..)))... ( -24.10) >consensus UC__UCAUUUUGUGCAGCCAUUUCGCCGAG________UGACGAAAGCACCUUCGUCACGCAUCUCGGCUCCAUUCGGGUGCAAACAAAGCGCCAGCAAACCGCUUCA ............(((.........((((((........(((((((......))))))).....))))))........(((((.......))))).))).......... (-20.40 = -22.15 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:08 2006