| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,518,003 – 13,518,115 |
| Length | 112 |
| Max. P | 0.913216 |
| Location | 13,518,003 – 13,518,115 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 82.03 |
| Mean single sequence MFE | -36.62 |
| Consensus MFE | -29.23 |
| Energy contribution | -29.12 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.913216 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13518003 112 - 20766785 -CCACGUUGAAUGCAAUGCGUUGCAACGGUAACAGAGCCAUAAAGCUCACCUGUUACAAAUGCAGCGCCACGUGGGCGUGGUCCCCUUCCCCUUCCCCGUCCCAUUACCAAUG -...(((((........((((((((...((((((((((......))))...))))))...))))))))...(((((((.((.............)).)).)))))...))))) ( -36.82) >DroSec_CAF1 66482 111 - 1 -CCACGUUGAAUGCAAUGCGUUGCAACGGUAACAGCGCCAUAAAGCUCACCUGUUACAAAUGAAGCGCCACGUGGGCGUGGUCC-CUUACCCUUUUCCUUCCCAUUGCCAAUG -...(((((...((((((.(((.((...(((((((.((......))....)))))))...)).)))((((((....))))))..-.................))))))))))) ( -28.80) >DroSim_CAF1 68755 111 - 1 -CCACGUUGAAUGCAAUGCGUUGCAACGGUAACAGAGCCAUAAAGCUCACCUGUUACAAAUGCAGCGCCACGUGGGCGUGGUCC-CUUACCCUUACCCUUCCCAUUGCCAAUG -...(((((...((((((.((((((...((((((((((......))))...))))))...))))))((((((....))))))..-.................))))))))))) ( -37.40) >DroEre_CAF1 67224 97 - 1 -CCACGUUGAAUGCAACG-GUUGCAACGGUAACAGAGCCAUAAAGCUCACCUGUUACAAAUGCAGCGCCACGUGGGCGUGGCCC-------------CUCCCC-UAGCCGAUG -...(((((....)))))-((((((...((((((((((......))))...))))))...))))))((((((....))))))..-------------......-......... ( -35.50) >DroYak_CAF1 69424 99 - 1 -CCACGUUGAAUGCAACGCGUUGCAACGGUAACAGAGCCAUAAAGCUCACCUGUUACAAAUGCAGCGCCACGUGGGCGUGGCUC-------------CGCCCCAUUGCCGAUG -...(((((...(((..((((((((...((((((((((......))))...))))))...))))))))...(((((.(((....-------------)))))))))))))))) ( -39.40) >DroAna_CAF1 68048 100 - 1 CACACGGCAAA----------UGCAACGGUAACAGAGCCAUAAAGCUCACCUGUUACAAAUGCAGCGCCACGUGGGCGUGGGCC---UGCCAUGACCCAUCCCGUGGCUGCGG ....(.(((..----------((((...((((((((((......))))...))))))...))))..(((((((((((((((...---..))))).))))...))))))))).) ( -41.80) >consensus _CCACGUUGAAUGCAAUGCGUUGCAACGGUAACAGAGCCAUAAAGCUCACCUGUUACAAAUGCAGCGCCACGUGGGCGUGGUCC___U_CCCUU_CCCUUCCCAUUGCCAAUG ....(((((..........((((((...((((((((((......)))...)))))))...))))))((((((....))))))..........................))))) (-29.23 = -29.12 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:07 2006