Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,515,873 – 13,515,976 |
Length | 103 |
Max. P | 0.999077 |
Location | 13,515,873 – 13,515,976 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 78.27 |
Mean single sequence MFE | -31.82 |
Consensus MFE | -17.85 |
Energy contribution | -20.98 |
Covariance contribution | 3.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.88 |
Structure conservation index | 0.56 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13515873 103 + 20766785 AACCGACGGUUUUCCCAUAUGCCCGGAUACGGAUUUGGAUCCUGGUCCGGAUUUUGGUUUAAGUACGAAAAGGAAAAGGCGAUGGGUGCGAGUGGUGAGUGGU .((((...((...(((((.(((((((((..((((....))))..)))))..((((.((......)).))))......))))))))).))...))))....... ( -30.80) >DroSec_CAF1 64331 101 + 1 AGCCGAGGGUUUUCCCAUAUGCCCGGAUCCGGAUUUGGAUCCCAGUUCGGAUUUUGGUUUAAGUACCAAAAGGAAAAGGCGAUGGGUGC--GUGGUGAGUGGU .((((...((...(((((.((((.(((((((....)))))))...(((...(((((((......))))))).)))..))))))))).))--.))))....... ( -34.30) >DroSim_CAF1 65059 101 + 1 AGCCGAGGGUUUUCCCAUAUGCCCGGAUCCGGAUUUGGAUCCCGGUUCGGAUUUUGGUUUAAGUACCAAAAGGAAAAGGAAAAGGGUGC--GUGGUGAGUGGU .((((......(((((((..(((((((((((....)))))))(..(((...(((((((......))))))).)))..).....))))..--)))).))))))) ( -34.00) >DroYak_CAF1 67195 81 + 1 AGCCGGAGGAUUUCCCAUAUGCCCGUAUACGGAUUGGGAACCGUGUCCGGAUUUUGGUUUAAGUACCAAAAUGCUAAAGGA---------------------- ..(((((.(..((((((.....(((....)))..))))))...).)))))((((((((......)))))))).........---------------------- ( -28.20) >consensus AGCCGAGGGUUUUCCCAUAUGCCCGGAUACGGAUUUGGAUCCCGGUCCGGAUUUUGGUUUAAGUACCAAAAGGAAAAGGCAAUGGGUGC__GUGGUGAGUGGU .((((...((...(((......(((((((.((((....)))).))))))).(((((((......)))))))............))).))...))))....... (-17.85 = -20.98 + 3.12)
Location | 13,515,873 – 13,515,976 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 78.27 |
Mean single sequence MFE | -25.85 |
Consensus MFE | -16.76 |
Energy contribution | -17.82 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.18 |
Mean z-score | -3.05 |
Structure conservation index | 0.65 |
SVM decision value | 3.36 |
SVM RNA-class probability | 0.999077 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13515873 103 - 20766785 ACCACUCACCACUCGCACCCAUCGCCUUUUCCUUUUCGUACUUAAACCAAAAUCCGGACCAGGAUCCAAAUCCGUAUCCGGGCAUAUGGGAAAACCGUCGGUU ..................((..((..((((((((((.((......)).))))((((((...((((....))))...)))))).....))))))..))..)).. ( -21.50) >DroSec_CAF1 64331 101 - 1 ACCACUCACCAC--GCACCCAUCGCCUUUUCCUUUUGGUACUUAAACCAAAAUCCGAACUGGGAUCCAAAUCCGGAUCCGGGCAUAUGGGAAAACCCUCGGCU ............--...(((((.((((.....(((((((......))))))).........((((((......))))))))))..)))))............. ( -28.40) >DroSim_CAF1 65059 101 - 1 ACCACUCACCAC--GCACCCUUUUCCUUUUCCUUUUGGUACUUAAACCAAAAUCCGAACCGGGAUCCAAAUCCGGAUCCGGGCAUAUGGGAAAACCCUCGGCU ............--..................(((((((......))))))).((((.((.((((((......)))))).)).....(((....))))))).. ( -27.50) >DroYak_CAF1 67195 81 - 1 ----------------------UCCUUUAGCAUUUUGGUACUUAAACCAAAAUCCGGACACGGUUCCCAAUCCGUAUACGGGCAUAUGGGAAAUCCUCCGGCU ----------------------......(((((((((((......)))))))).((((.....((((((.((((....))))....))))))....))))))) ( -26.00) >consensus ACCACUCACCAC__GCACCCAUCGCCUUUUCCUUUUGGUACUUAAACCAAAAUCCGAACCGGGAUCCAAAUCCGGAUCCGGGCAUAUGGGAAAACCCUCGGCU ................................(((((((......))))))).((((.((.((((((......)))))).)).....(((....))))))).. (-16.76 = -17.82 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:05 2006