Locus 4110

Sequence ID 2R_DroMel_CAF1
Location 13,515,411 – 13,515,504
Length 93
Max. P 0.945637
window6620

overview

Window 0

Location 13,515,411 – 13,515,504
Length 93
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 76.83
Mean single sequence MFE -31.13
Consensus MFE -16.42
Energy contribution -16.82
Covariance contribution 0.39
Combinations/Pair 1.15
Mean z-score -2.32
Structure conservation index 0.53
SVM decision value 1.36
SVM RNA-class probability 0.945637
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13515411 93 - 20766785
CUUAGCA----GCGGAGGCGCGAGUCUUAGGCAUAAAGCUGGAUUAUGGCUUUAAGUGUAAUUACCAUUUACAUGGCUUCCAU---------GCCUGCCAGCUGG---------C-
.....((----((.(((((....))))).((((((((((((.....)))))))).((((((.......))))))(((......---------))))))).)))).---------.- ( -33.80)
>DroPse_CAF1 61099 109 - 1
CUUAGCAGACGGCGUAGGCGCGAGUUUUAGGCAUAAAGCUGGAUUAUGGCUUUAAGUGUAAUUACAAUUUACAUGGCUUCCAUCCCGCCUUUGCCUUCCAGCUGCCUA------C-
..((((.((.((((.(((((..(((((((....)))))))((((...((((....((((((.......))))))))))...))))))))).)))).))..))))....------.- ( -35.00)
>DroGri_CAF1 31634 101 - 1
CAUAUCAA---AAGGA-GCUCGCGUUUUGCGCAUAAAGCCGGAUUAUGGUUUUAAGUGUAAUUACAAUUUACAUGGCUUCCAU---------U-CUGUCAGCUACA-UCUACGGCU
........---..(((-(((.(((.....))).((((((((.....)))))))).((((((.......))))))))))))...---------.-.....((((...-.....)))) ( -23.10)
>DroWil_CAF1 37322 89 - 1
UUU---A----ACAGAGGCGCGAGCUUUAAGCAUAAAGCUGGAUUAUGGUUUUAAGUGUAAUUACAAUUUACAUGGCUUCCAU---------UCC----AGCUGCCAG------C-
...---.----...(((((....)))))..((....(((((((..((((......((((((.......)))))).....))))---------)))----))))....)------)- ( -27.90)
>DroAna_CAF1 65398 96 - 1
CUUAGCAGUCGGCGGAAGCGCGAGUCUUAGGCAUAAAGCGGGAUUAUGGCUUUAAGUGUAAUUACCAUUUACAUGGCUUCCAU----------CCUGCCAUCUGC---------C-
..(((.(.(((((....)).))).).)))((((....(((((((...((((....((((((.......))))))))))...))----------)))))....)))---------)- ( -31.50)
>DroPer_CAF1 69647 109 - 1
CUUAGCAGUCGGCGUAGGCGCGAGUUUUAGGCAUAAAGCUGGAUUAUGGCUUUAAGUGUAAUUACAAUUUACAUGGCUUCCAUCCCGCCUUUGCCUUUCAGCUGCCUA------C-
....(((((.((((.(((((..(((((((....)))))))((((...((((....((((((.......))))))))))...))))))))).)))).....)))))...------.- ( -35.50)
>consensus
CUUAGCAG___GCGGAGGCGCGAGUUUUAGGCAUAAAGCUGGAUUAUGGCUUUAAGUGUAAUUACAAUUUACAUGGCUUCCAU_________GCCUGCCAGCUGCC________C_
.............((((((..............((((((((.....)))))))).((((((.......)))))).))))))................................... (-16.42 = -16.82 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:03 2006