Locus 4107

Sequence ID 2R_DroMel_CAF1
Location 13,505,642 – 13,505,738
Length 96
Max. P 0.609143
window6616

overview

Window 6

Location 13,505,642 – 13,505,738
Length 96
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 82.61
Mean single sequence MFE -16.20
Consensus MFE -11.42
Energy contribution -11.20
Covariance contribution -0.22
Combinations/Pair 1.32
Mean z-score -1.68
Structure conservation index 0.70
SVM decision value 0.15
SVM RNA-class probability 0.609143
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13505642 96 - 20766785
CACCAGAUUUUGUGGCCAAGAAAUCAAAUUCA------------AAAUCAAAAACGAGCCCAAAUGCAUUGCCAUAAUUGAAUUUACAGCAUGGUGAAUUCAACCUAA
.........(((((((...(((......))).------------.............((......))...)))))))((((((((((......))))))))))..... ( -18.50)
>DroSec_CAF1 54075 96 - 1
CACCAGAUUCUGUGGCCAAGAAAUCAAAUUCA------------AAAUCAAAAACGAGCCCAAAUGCAUUGCCAUAAUUGAAUUUACAGCACGGUGAAUUCAACCUAA
..........((((((...(((......))).------------.............((......))...)))))).((((((((((......))))))))))..... ( -17.70)
>DroSim_CAF1 54758 96 - 1
CACCAGAUUCUGUGGCCAAGAAAUCAAAUUCA------------AAAUCAAAAACGAGCCCAAAUGCAUUGCCAUAAUUGAAUUUACAGCAUGGUGAAUUCAACCUAA
..........((((((...(((......))).------------.............((......))...)))))).((((((((((......))))))))))..... ( -17.70)
>DroEre_CAF1 55156 102 - 1
CACCAGAUUUUGUGGCCAAGAAAUCAAAAUGAAAAU------CAAAAUCCAAAACAAGCCCAAAUGCAUUGUCAUAAUUGAAUUUACAGCAUGCUGAAUUCAACCUAA
.....(((..((((((.............((.....------)).............))).....)))..)))....(((((((..(((....))))))))))..... ( -12.37)
>DroYak_CAF1 56716 108 - 1
CACCCGAUUGUGUGGCCAAGAAAUCAAAAUCAAAAUCACCAUCAAAAUCAAAAACAACCCCAAAUGCAUUGUCAUAAUUGAAUUUACAGCAUGCUGAAUUCAACCUAA
.....((((.(((((.......................))).)).))))............................(((((((..(((....))))))))))..... ( -10.60)
>DroAna_CAF1 55462 91 - 1
CGGCAAAUUUUGCGGUCAAGAAAUCAAAAUCA------------AAAGCCU----CGCCCCAAAUGCAUUGCCAUAAUUGAAUUUGCAGCCGAGCAAAUUCGG-AUAA
.(((((..((((.(((..((............------------.....))----.))).))))....)))))....((((((((((......))))))))))-.... ( -20.33)
>consensus
CACCAGAUUUUGUGGCCAAGAAAUCAAAAUCA____________AAAUCAAAAACGAGCCCAAAUGCAUUGCCAUAAUUGAAUUUACAGCAUGGUGAAUUCAACCUAA
..........((((((...(....)................................((......))...)))))).((((((((((......))))))))))..... (-11.42 = -11.20 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:59 2006