Locus 4105

Sequence ID 2R_DroMel_CAF1
Location 13,503,436 – 13,503,527
Length 91
Max. P 0.626478
window6614

overview

Window 4

Location 13,503,436 – 13,503,527
Length 91
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 81.54
Mean single sequence MFE -27.39
Consensus MFE -16.57
Energy contribution -16.48
Covariance contribution -0.08
Combinations/Pair 1.12
Mean z-score -1.96
Structure conservation index 0.60
SVM decision value 0.19
SVM RNA-class probability 0.626478
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13503436 91 - 20766785
GGCUGUGUGUGGGUA----UCGGCAUUGACAUGCCAUAGCCUCAAGUGGUAUUAAUUUUCCGCUUGUCUAGAGUUAUUACUCAUACGCCGUGGUG
.((.(((((((((((----..(((((....)))))((((((((((((((..........)))))))...)).)))))))))))))))).)).... ( -33.10)
>DroPse_CAF1 49122 93 - 1
GUCCA-GCA-GGACAUACUGAAGCAGUGACAUGGCAAGGCCUCAAGUGGUAUUAAUUUUCCGCUUGUCUAGAGUUAUUACUCAUACGCUGGGGUG
.((((-((.-(((((...(((.((..((......))..)).)))(((((..........)))))))))).((((....))))....))))))... ( -28.70)
>DroEre_CAF1 53034 76 - 1
-------------------GCGGCAUUGACAUGCCAUAGCCUCAAGUGGUAUUAAUUUUCCGCUUGUCUAGAGUUAUUACUCAUACGCCGUGGUG
-------------------(((((............(((...(((((((..........))))))).)))((((....))))....))))).... ( -22.30)
>DroYak_CAF1 54444 82 - 1
GGGUG---------A----GCGGCAUUGACAUGCCAUAGCCUCAAGUGGUAUUAAUUUUCCGCUUGUCUAGAGUUAUUACUCAUACGCCGUGGUG
(((..---------(----((((.......(((((((........))))))).......)))))..))).((((....))))...(((....))) ( -25.74)
>DroAna_CAF1 53531 88 - 1
AGCUGUGUCUG---U----GGAGCAUUGACAUGUCAUGGCCUCAAGUGGUAUUAAUUUUCCGCUUGUCUAGAGUUAUUACUCAUACGCCGUGGUG
....(((((.(---(----(...))).))))).(((((((..(((((((..........)))))))....((((....))))....))))))).. ( -26.90)
>DroPer_CAF1 57184 93 - 1
GUCCA-GCA-GGACAUACUGAAGCAGUGACAUGGCAAGGCCUCAAGUGGUAUUAAUUUUCCGCUUGUCUAGAGUUAUUACUCAUACGCUGUGGUG
((((.-...-)))).(((((...))))).((((((.((((...((((((..........)))))))))).((((....))))....))))))... ( -27.60)
>consensus
GGCUG_G___G___A____GCAGCAUUGACAUGCCAUAGCCUCAAGUGGUAUUAAUUUUCCGCUUGUCUAGAGUUAUUACUCAUACGCCGUGGUG
.....................(((............(((...(((((((..........))))))).)))((((....))))....)))...... (-16.57 = -16.48 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:57 2006