Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,430,457 – 2,430,561 |
Length | 104 |
Max. P | 0.640712 |
Location | 2,430,457 – 2,430,561 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 92.68 |
Mean single sequence MFE | -35.44 |
Consensus MFE | -27.46 |
Energy contribution | -27.77 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -1.90 |
Structure conservation index | 0.77 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2430457 104 - 20766785 ACAAAAUGGCCGCCGACGCCAUUGUUGUCAAAAAAAGGCGUCAAGCGCGUCAAGUUGGUUGCGGGAGGGGCAGUGGGU----GUUGGGGAUGGGUGGCAUAAGAGGCA ........((((((((((((.((.((....)).)).)))))).(((((.(((.....(((.(....).)))..)))))----))).......)))))).......... ( -32.50) >DroSec_CAF1 86402 104 - 1 ACAAAAUGGCCGCCGACGCCAUUGUUGUCAAAAAAAGGCGUCAAGCGCGUCAAGUUGGUUGCGGGAGGGGCAGUGGGG----GUUGGCGAUGGGUGGCAUAAGAGGCA ........((((((.(((((((((.((((.......)))).)))((.(.((..((.....))..)).).)).......----..))))).).)))))).......... ( -34.20) >DroSim_CAF1 43825 107 - 1 ACAAAAUGGCCGCCGACGCCAUUGUUGUCAAAAAAAGGCGUCAAGCGCGUCAAGUUGGUUGCGGGAGGGGCAGUGGGG-GCAGUUGGCGAUGGGUGGCAUAAGAGGCA ........((((((.(((((((((((.(((......(((((.....)))))......(((.(....).)))..))).)-)))).))))).).)))))).......... ( -38.50) >DroYak_CAF1 42619 108 - 1 ACAAAAUGGCCGCCGACGCCAUUGUUGUCAAAAAAAGGCGUCAAGCUCGUCAAGUUGGGUGUGGGCGGGGGAGGGGGAUGGGGAUGGGGAUGGGUGGCAUAAGAGGCA ........((((((.((.(((((.(..((.........((((..(((((......)))))...)))).........))..).))))).).).)))))).......... ( -36.57) >consensus ACAAAAUGGCCGCCGACGCCAUUGUUGUCAAAAAAAGGCGUCAAGCGCGUCAAGUUGGUUGCGGGAGGGGCAGUGGGG____GUUGGCGAUGGGUGGCAUAAGAGGCA ........((((((((((((.((.((....)).)).))))))..((.(.((..((.....))..)).).)).....................)))))).......... (-27.46 = -27.77 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:52 2006