Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,490,369 – 13,490,462 |
Length | 93 |
Max. P | 0.657178 |
Location | 13,490,369 – 13,490,462 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 89.14 |
Mean single sequence MFE | -9.92 |
Consensus MFE | -7.98 |
Energy contribution | -8.62 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.06 |
Mean z-score | -1.51 |
Structure conservation index | 0.80 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657178 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13490369 93 + 20766785 CUUUCCAAACUUUGCAAUACUUAUAAACUUUAUCCACUGUCGCACUCUAAAUUUGUUUGCACGUUCUGCAAAUAACUGUUUGUCAUUCUUAAA .....(((((..(((.(((..................))).)))........(((((((((.....)))))))))..)))))........... ( -11.17) >DroSec_CAF1 38961 83 + 1 CUUUCCAAACUUUGCAAUACUUAUAAACUUUAUCCACUGCCACACUCUAAAUUUGUUUGCACGUUCUGCAAAUAACUGU----------UACA ....................................................(((((((((.....)))))))))....----------.... ( -7.50) >DroSim_CAF1 39178 93 + 1 CUUUCCAAACUUUGCAAUACUUAUAAACUUUAUCCACUGCCACACUCUAAAUUUGUUUGCACGUUCUGCAAAUAACUGUUUGUCACUCUUACA .....(((((...(((.....((.......)).....)))............(((((((((.....)))))))))..)))))........... ( -10.70) >DroEre_CAF1 39303 93 + 1 CUUUCCAAACUUUGCAAUACUUAUAAACUUUCUCCUCUGCCGCACUCUAAAUUUGUUUGCACGUUCUGCAAAUAACCGCUUGCCAUUCUUAAA .........................................(((........(((((((((.....))))))))).....))).......... ( -8.22) >DroYak_CAF1 40850 93 + 1 CUUUCCAAACAUUGCAAUACUUUUCAACUUUAUGCUCUGCCACACUCUAAAUUUGUUUGCACGCUCUGCAAAUAACUGUUUGCCAUUCUUACA .....((((((..(((................))).................(((((((((.....))))))))).))))))........... ( -11.99) >consensus CUUUCCAAACUUUGCAAUACUUAUAAACUUUAUCCACUGCCACACUCUAAAUUUGUUUGCACGUUCUGCAAAUAACUGUUUGCCAUUCUUACA .....(((((...(((.....................)))............(((((((((.....)))))))))..)))))........... ( -7.98 = -8.62 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:45 2006