| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,485,907 – 13,486,053 |
| Length | 146 |
| Max. P | 0.739718 |
| Location | 13,485,907 – 13,486,018 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.57 |
| Mean single sequence MFE | -29.60 |
| Consensus MFE | -18.75 |
| Energy contribution | -22.75 |
| Covariance contribution | 4.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.739718 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13485907 111 + 20766785 UUUGUUC---CUUGC--UUUUGUGGCAUGUUUGCGCCAUUUUGCGUUUUUGUUUAUGUUUAGCUGGGUCAUUGCGGCCAUUCCUUAUGGCAUACAUAUGUAC----AUACAUAUGUGUAU ..((..(---((.((--(.....((((((...((((......)))).......)))))).))).))).)).....(((((.....)))))((((((((((..----..)))))))))).. ( -30.10) >DroPse_CAF1 32222 116 + 1 CUCCUGCCAGCUUGCUGCUUUGUGGCAUGUUUGCGCCAUUUUGCGUUUUUGUUUAUGUUUAGCUGGGUCAUUGCGGCCAUUCCAUAUAGCAUACAUAUGU----AUGUACAUAUGGCUAU .......(((((.(((((...(((((........)))))...)))...........))..)))))((((.....))))...((((((.((((((....))----))))..)))))).... ( -31.20) >DroEre_CAF1 34851 111 + 1 UUUGUUC---CUGGC--UUUUGUGGCAUGUUUGCGCCAUUUUGCGUUUUUGUUUAUGUUUAGCUGGGUCAUUGCGGCCAUUCCUUAUGCCAUACA----UACAAAUAUACAUGUGUGUAU ..((..(---(..((--(.....((((((...((((......)))).......)))))).)))..)).))....(((.((.....)))))(((((----((((........))))))))) ( -27.80) >DroPer_CAF1 40284 116 + 1 CUCAUGCCUGCUUGCUGUUUUGUGGCAUGUUUGCGCCAUUUUGCGUUUUUGUUUAUGUUUAGCUGGGUCAUUGCGGCCAUUCCAUAUAGCAUACAUAUGU----AUGUACAUAUGGCUAU ..((((((.((..........))))))))...((((......)))).............((((..((((.....))))....(((((.((((((....))----))))..))))))))). ( -29.30) >consensus CUCGUGC___CUUGC__UUUUGUGGCAUGUUUGCGCCAUUUUGCGUUUUUGUUUAUGUUUAGCUGGGUCAUUGCGGCCAUUCCAUAUAGCAUACAUAUGU____AUAUACAUAUGGCUAU .............(((((...(((((.(((.(((.(((((..((((........))))..)).)))).))..)))))))).....)))))(((((((((((......))))))))))).. (-18.75 = -22.75 + 4.00)
| Location | 13,485,942 – 13,486,053 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 71.90 |
| Mean single sequence MFE | -19.16 |
| Consensus MFE | -3.76 |
| Energy contribution | -4.08 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.20 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.723695 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13485942 111 - 20766785 CAUACCAACACACACAUACACACCGACACAA-UGGG--AUACACAUAUGUAU----GUACAUAUGUAUGCCAUAAGGAAUGGCCGCAAUGACCCAGCUAAACAUAAACAAAAACGCAA ...............................-((((--....((((((((..----..))))))))..(((((.....)))))........))))....................... ( -19.40) >DroPse_CAF1 32262 112 - 1 -AGACCCACAUACGCACACACAAAGAGAAAG-UGGCACAUAGCCAUAUGUACAU----ACAUAUGUAUGCUAUAUGGAAUGGCCGCAAUGACCCAGCUAAACAUAAACAAAAACGCAA -............((...............(-((((.(((..(((((((..(((----((....))))).))))))).)))))))).(((...........)))..........)).. ( -23.30) >DroEre_CAF1 34886 95 - 1 CAUACCAACACA----------------CAA-GGAG--AUACACACAUGUAUAUUUGUA----UGUAUGGCAUAAGGAAUGGCCGCAAUGACCCAGCUAAACAUAAACAAAAACGCAA ....((((((.(----------------(((-(...--(((((....))))).))))).----))).))).........((((.(........).))))................... ( -12.90) >DroAna_CAF1 36282 101 - 1 --------CACACACAGGCAUACCCAGAGGACCGUG--CGGCACAUACGUAU----GUAU---CAUAUGCUAUAAGGAAUGCCCGCAAUGACCCAGCCAAACAUAAACAAAAACGCAA --------........(((...((....))...(((--.((((....(((((----(...---))))))((....))..))))))).........))).................... ( -16.90) >DroPer_CAF1 40324 112 - 1 -AGACCCACAUACGCACACACAAAGAGAAAG-UGGCACAUAGCCAUAUGUACAU----ACAUAUGUAUGCUAUAUGGAAUGGCCGCAAUGACCCAGCUAAACAUAAACAAAAACGCAA -............((...............(-((((.(((..(((((((..(((----((....))))).))))))).)))))))).(((...........)))..........)).. ( -23.30) >consensus _AGACCAACACACACACACACAAAGAGAAAA_UGGG__AUACACAUAUGUAUAU__GUACAUAUGUAUGCUAUAAGGAAUGGCCGCAAUGACCCAGCUAAACAUAAACAAAAACGCAA .................................(((.....))).(((((..................(((((.....))))).((.........))...)))))............. ( -3.76 = -4.08 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:39 2006