Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,475,841 – 13,475,936 |
Length | 95 |
Max. P | 0.846521 |
Location | 13,475,841 – 13,475,936 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 87.44 |
Mean single sequence MFE | -33.94 |
Consensus MFE | -27.33 |
Energy contribution | -28.13 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.81 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.833947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13475841 95 + 20766785 ----------CCUGCAGUCAAGCUGUGCAAUUGACUCGCAAGUCGAGUCGCCUGCGAGGCUUAUCCUCAUCGCCAUUUUGUCUGCUCGACUCGGCUCUGCAUUCG ----------..(((((..(((((.((((..(((((((.....)))))))..)))).))))).........(((.....(((.....)))..))).))))).... ( -31.30) >DroSec_CAF1 24497 105 + 1 UGGCCCCCGUUCUGCAGUCAAGCUGUGCAGUUGACUCGCAAGUCGAGUCGCCUGCGAGGCUUAUCCUCAUCGCCAUUUUGUCUGCUCGGCUCGGCUCUGCAUUCG .((((.(((....((((.((((.((.((((.(((((((.....))))))).))))((((.....)))).....)).)))).)))).)))...))))......... ( -39.00) >DroSim_CAF1 24522 105 + 1 UGGCCCCCGUUCUGCAGUCAAGCUGUGCAGUUGACUCGCAAGUCGAGUCGCCUGCGAGGCUUAUCCUCAUCGCCAUUUUGUCUGCUCGGCUCGGCUCUGCAUUCG .((((.(((....((((.((((.((.((((.(((((((.....))))))).))))((((.....)))).....)).)))).)))).)))...))))......... ( -39.00) >DroEre_CAF1 25148 93 + 1 ------UCAUCCUGCAG-CAAGCUGUGCAGUUGCCUCGCAAGUCGAGUCGCCUGCCAGGCUUAUCCCCAUCGCCAUUUUGUCUGCGC-----GGCUCUGCAUUCG ------......(((((-..((((((((((..((((.(((.((......)).))).))))...........((......))))))))-----))))))))).... ( -31.50) >DroYak_CAF1 25967 94 + 1 ------UCCUUCUGCAGUCAAGCUGUGCAGUUGACUCGCAAGUCGAGUCGCCUGCGAGGCUUAUCCCCAUCGCCAUUUUGUCUGCUC-----GCCUCUGCAUUCG ------.......((((.((((...(((((.(((((((.....))))))).))))).(((...........)))..)))).))))..-----((....))..... ( -28.90) >consensus ______CCGUUCUGCAGUCAAGCUGUGCAGUUGACUCGCAAGUCGAGUCGCCUGCGAGGCUUAUCCUCAUCGCCAUUUUGUCUGCUCG_CUCGGCUCUGCAUUCG ............(((((..(((((.(((((.(((((((.....))))))).))))).))))).........(((..................))).))))).... (-27.33 = -28.13 + 0.80)
Location | 13,475,841 – 13,475,936 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 87.44 |
Mean single sequence MFE | -35.22 |
Consensus MFE | -29.32 |
Energy contribution | -30.84 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.11 |
Mean z-score | -1.73 |
Structure conservation index | 0.83 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846521 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13475841 95 - 20766785 CGAAUGCAGAGCCGAGUCGAGCAGACAAAAUGGCGAUGAGGAUAAGCCUCGCAGGCGACUCGACUUGCGAGUCAAUUGCACAGCUUGACUGCAGG---------- ..........((..((((((((...............((((.....))))((((..((((((.....))))))..))))...))))))))))...---------- ( -33.60) >DroSec_CAF1 24497 105 - 1 CGAAUGCAGAGCCGAGCCGAGCAGACAAAAUGGCGAUGAGGAUAAGCCUCGCAGGCGACUCGACUUGCGAGUCAACUGCACAGCUUGACUGCAGAACGGGGGCCA ((..(((((...(((((.(.((((.......(.(..(((((.....)))))..).)((((((.....))))))..)))).).))))).)))))...))....... ( -37.90) >DroSim_CAF1 24522 105 - 1 CGAAUGCAGAGCCGAGCCGAGCAGACAAAAUGGCGAUGAGGAUAAGCCUCGCAGGCGACUCGACUUGCGAGUCAACUGCACAGCUUGACUGCAGAACGGGGGCCA ((..(((((...(((((.(.((((.......(.(..(((((.....)))))..).)((((((.....))))))..)))).).))))).)))))...))....... ( -37.90) >DroEre_CAF1 25148 93 - 1 CGAAUGCAGAGCC-----GCGCAGACAAAAUGGCGAUGGGGAUAAGCCUGGCAGGCGACUCGACUUGCGAGGCAACUGCACAGCUUG-CUGCAGGAUGA------ ....((((((((.-----(.((((.(.....).............((((.(((((((...)).))))).))))..)))).).)))..-)))))......------ ( -31.30) >DroYak_CAF1 25967 94 - 1 CGAAUGCAGAGGC-----GAGCAGACAAAAUGGCGAUGGGGAUAAGCCUCGCAGGCGACUCGACUUGCGAGUCAACUGCACAGCUUGACUGCAGAAGGA------ (...(((((...(-----((((...............((((.....))))((((..((((((.....))))))..))))...))))).)))))...)..------ ( -35.40) >consensus CGAAUGCAGAGCCGAG_CGAGCAGACAAAAUGGCGAUGAGGAUAAGCCUCGCAGGCGACUCGACUUGCGAGUCAACUGCACAGCUUGACUGCAGAACGA______ ....(((((...(((((.(.((((.......(.(..(((((.....)))))..).)((((((.....))))))..)))).).))))).)))))............ (-29.32 = -30.84 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:30 2006