| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,429,788 – 2,429,890 |
| Length | 102 |
| Max. P | 0.542105 |
| Location | 2,429,788 – 2,429,890 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 80.72 |
| Mean single sequence MFE | -20.33 |
| Consensus MFE | -12.90 |
| Energy contribution | -13.13 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.542105 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2429788 102 - 20766785 CAGGCGCAAUUGCAGUCAAACGCAAUUGUUUUUGAUUGAAAUCAAUUGCAAAAUCACCCGAAAGUGCACUAACAUAAUUGUUAUUUAUAAUUGUUGAAGUUU ...(((((((((((((((((.((....)).))))))))....))))))).........(....).))(((...((((((((.....))))))))...))).. ( -22.70) >DroSim_CAF1 43151 101 - 1 CAGGCGCAAUUGCAGUCAAACGCAAUUGUUUUUGAUUGCAAUCAAUUGUAAAAUCACCCGAAACUGCACUAACAUAAUUGUUAUUUAUAAUUGUUGAAGUU- ..(((...((((((((((((.((....)).))))))))))))((((((((((.((....))........(((((....))))))))))))))).....)))- ( -23.20) >DroEre_CAF1 41418 91 - 1 CAACCGCACUUUCAAUGAAACGCAAUUGUUUUUGAUUGCAAUCAAUUGUAAAGUCACCCAAA-----------GUAAUUGUUUUCCAUUAUUGGUAAAGUUU ..((((.(((((((((.....((((((......)))))).....)))).))))))......(-----------(((((.(....).)))))))))....... ( -15.10) >consensus CAGGCGCAAUUGCAGUCAAACGCAAUUGUUUUUGAUUGCAAUCAAUUGUAAAAUCACCCGAAA_UGCACUAACAUAAUUGUUAUUUAUAAUUGUUGAAGUUU ..((((((((((((((((((.((....)).))))))))....)))))))..........................((((((.....)))))))))....... (-12.90 = -13.13 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:51 2006