Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,463,934 – 13,464,046 |
Length | 112 |
Max. P | 0.666225 |
Location | 13,463,934 – 13,464,046 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 87.54 |
Mean single sequence MFE | -20.20 |
Consensus MFE | -15.40 |
Energy contribution | -14.84 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.19 |
Mean z-score | -1.67 |
Structure conservation index | 0.76 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666225 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13463934 112 - 20766785 CGAUUUAAAUAAUUUAUAUUCAAAACAAUAAUGGCUUAAUGCCAUUAAACAAACCAGAGCUGCGUAGCUUUUCUGUGAUUAUACGAAUACAAUACCCGCAACCAUAACAAUA ................(((((.......(((((((.....)))))))..((....((((((....))))))....)).......)))))....................... ( -17.70) >DroSec_CAF1 12710 112 - 1 CGAUUUAAAUAAUUUAUAUUCAAAACAAUAAUGGCUUAAUGCCAUUAAACAAAGCCGAGCUGGGUGGCUUUUCUAUGAUUAUGCGAAUACAAUACCCGCAAUACUAACAAUA ...............(((.(((......(((((((.....)))))))...(((((((.......)))))))....))).)))(((...........)))............. ( -19.90) >DroSim_CAF1 12892 112 - 1 CGAUUUAAAUAAUUUAUAUUCAAAACAAUAAUGGCUUAAUGCCAUUAAACAAAGCCGAGCUGCGUGGCUUUUCUGUGAUUAUGCGAAUACAAUACCCGCAAUACUAACAAUA ...............(((.(((......(((((((.....)))))))...(((((((.......)))))))....))).)))(((...........)))............. ( -19.80) >DroEre_CAF1 13066 108 - 1 UGAGUUAAAUAAUUCAUAUUCAAAACAAUAAUGGCUUAAUGCCAUUAAA----GCAAAGCUGCGUAGCUUUUCUGUGAUUAUUGGAAUGCAAUACCCGCAAUACUCACAAUA (((((..((((((.(((...........(((((((.....))))))).(----(.((((((....)))))).)))))))))))....(((.......)))..)))))..... ( -24.00) >DroYak_CAF1 13531 108 - 1 CGACUUAAAUCAUUUAUAUUCAAAACAAUAAUGGCUUAAUGUCAUUAAG----CCAGAGCGGCGUAGCUUUUCUGUCAUUAUACGAAUGCAAUGGCCGUAUUACUAACAAUA ...............................(((((((((...))))))----)))..(((((((.((..(((.((......))))).)).)).)))))............. ( -19.60) >consensus CGAUUUAAAUAAUUUAUAUUCAAAACAAUAAUGGCUUAAUGCCAUUAAACAAAGCAGAGCUGCGUAGCUUUUCUGUGAUUAUACGAAUACAAUACCCGCAAUACUAACAAUA ................(((((.......(((((((.....))))))).........((((......))))..............)))))....................... (-15.40 = -14.84 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:28 2006