Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,461,469 – 13,461,563 |
Length | 94 |
Max. P | 0.871640 |
Location | 13,461,469 – 13,461,563 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 82.13 |
Mean single sequence MFE | -20.87 |
Consensus MFE | -11.38 |
Energy contribution | -11.58 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.18 |
Structure conservation index | 0.55 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683732 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13461469 94 + 20766785 UUAAUUUUCCACACAUUAAAGUCAGUGUGGAAAAAAUAGAAGGCAGCCGUAACUCAUUU-----UUCGCUGCAUAUUUUAUUUAUUUGUUUGAU----ACAAC .....(((((((((..........)))))))))((((((((.(((((............-----...)))))...))))))))..((((.....----)))). ( -23.46) >DroSec_CAF1 10260 98 + 1 UUAAUUUUCCACACAUUAAAGUCAGUGUGGAAAAACUAGAACGCAGGCGUAACUCAUUU-----UUCGCCGCAUAUUUUAUUUAUUGGUUUAAUUACCCCAGC ....((((((((((..........))))))))))........((.((((..........-----..))))))..............(((......)))..... ( -22.20) >DroSim_CAF1 10422 98 + 1 UUAAUUUUCCACACAUUAAAGUCAGUGUGGAAAAACUAGAACGCAGGCGUAACUCAUUU-----UUCGCCGCAUAUUUUAUUUAUUGGUUUAAUUACCCCAGC ....((((((((((..........))))))))))........((.((((..........-----..))))))..............(((......)))..... ( -22.20) >DroEre_CAF1 10683 94 + 1 UUAAUUUUCCACACAUUAAAGUCAGUGUUGAAAAACCAGCAGG----CGUACUUCGUUU-----CUCAGUGUAUAUUUUAUUUAUUGGUCUAAUUACCCCAAC .(((((..(((.....((((((..(..((((.((((....((.----....))..))))-----.))))..)..)))))).....)))...)))))....... ( -11.70) >DroYak_CAF1 11159 99 + 1 UUAAUUUUCCACACAUUAAAGUCUGUGUGGAAAAAGUAGAACG----AGAACUACGGUUCAGUUUUCGUUGCAUAUUUUAUUUAUUGGUUUAAUUACUUCAAC ....(((((((((((........)))))))))))(((((((((----((((((.......))))))))))...((..(((.....)))..)).)))))..... ( -24.80) >consensus UUAAUUUUCCACACAUUAAAGUCAGUGUGGAAAAACUAGAACGCAG_CGUAACUCAUUU_____UUCGCUGCAUAUUUUAUUUAUUGGUUUAAUUACCCCAAC ....((((((((((..........))))))))))..................................................................... (-11.38 = -11.58 + 0.20)
Location | 13,461,469 – 13,461,563 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 82.13 |
Mean single sequence MFE | -22.63 |
Consensus MFE | -12.75 |
Energy contribution | -12.47 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.29 |
Mean z-score | -2.46 |
Structure conservation index | 0.56 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13461469 94 - 20766785 GUUGU----AUCAAACAAAUAAAUAAAAUAUGCAGCGAA-----AAAUGAGUUACGGCUGCCUUCUAUUUUUUCCACACUGACUUUAAUGUGUGGAAAAUUAA (((..----....)))...............(((((...-----............)))))........((((((((((..........)))))))))).... ( -20.06) >DroSec_CAF1 10260 98 - 1 GCUGGGGUAAUUAAACCAAUAAAUAAAAUAUGCGGCGAA-----AAAUGAGUUACGCCUGCGUUCUAGUUUUUCCACACUGACUUUAAUGUGUGGAAAAUUAA ((((((((......)))............((((((((.(-----(......)).)))).)))).)))))((((((((((..........)))))))))).... ( -27.60) >DroSim_CAF1 10422 98 - 1 GCUGGGGUAAUUAAACCAAUAAAUAAAAUAUGCGGCGAA-----AAAUGAGUUACGCCUGCGUUCUAGUUUUUCCACACUGACUUUAAUGUGUGGAAAAUUAA ((((((((......)))............((((((((.(-----(......)).)))).)))).)))))((((((((((..........)))))))))).... ( -27.60) >DroEre_CAF1 10683 94 - 1 GUUGGGGUAAUUAGACCAAUAAAUAAAAUAUACACUGAG-----AAACGAAGUACG----CCUGCUGGUUUUUCAACACUGACUUUAAUGUGUGGAAAAUUAA ((..((((......)))..................((((-----((((..((((..----..)))).))))))))...)..)).................... ( -15.90) >DroYak_CAF1 11159 99 - 1 GUUGAAGUAAUUAAACCAAUAAAUAAAAUAUGCAACGAAAACUGAACCGUAGUUCU----CGUUCUACUUUUUCCACACAGACUUUAAUGUGUGGAAAAUUAA (((.((....)).))).................(((((.(((((.....))))).)----)))).....(((((((((((........))))))))))).... ( -22.00) >consensus GUUGGGGUAAUUAAACCAAUAAAUAAAAUAUGCAGCGAA_____AAAUGAGUUACG_CUGCGUUCUAGUUUUUCCACACUGACUUUAAUGUGUGGAAAAUUAA ((((............................)))).................................((((((((((..........)))))))))).... (-12.75 = -12.47 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:21 2006