Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,456,140 – 13,456,233 |
Length | 93 |
Max. P | 0.603332 |
Location | 13,456,140 – 13,456,233 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 89.04 |
Mean single sequence MFE | -29.98 |
Consensus MFE | -26.40 |
Energy contribution | -26.82 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.04 |
Mean z-score | -1.41 |
Structure conservation index | 0.88 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603332 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13456140 93 + 20766785 UGCGAAAGCCUGCGGUGUC-UGUGCCAAGCAGGUGAGAAAUUGCUUAAUUGUGAUUUCAACGCAUAUCAGUCAGAGGUCUUGACC-CCA--GUCAGA--------- ((((...(((((((((...-...)))..))))))..(((((..(......)..)))))..)))).....(((((.....))))).-...--......--------- ( -28.10) >DroSec_CAF1 4994 94 + 1 UGCGAAAGCCUGCGGUGUC-UGUGCCAAGCAGGUGAGAAAUUGCUUAAUUGUGAUUUCAACGCAUAUCAGUCAGAGGUCCUGACCCCCA--GCCAGA--------- ((((...(((((((((...-...)))..))))))..(((((..(......)..)))))..)))).....(((((.....))))).....--......--------- ( -30.60) >DroSim_CAF1 5167 93 + 1 UGCGAAAGCCUGCGGUGUC-UGUGCCAAGCAGGUGAGAAAUUGCUUAAUUGUGAUUUCAACGCAUAUCAGUCAGAGGUCUUGACC-CCA--CCCAGA--------- ((((...(((((((((...-...)))..))))))..(((((..(......)..)))))..)))).....(((((.....))))).-...--......--------- ( -28.10) >DroEre_CAF1 5523 93 + 1 UGCGAAAGCCUGCGGUGUC-UGUGCCAAGCAGGUGGGAAAUUGCUUAAUUGUGAUUUCAACGCAUAUCAGUCAGAGGUCCUGACC-CCA--GCCCGU--------- ((((...(((((((((...-...)))..))))))..(((((..(......)..)))))..)))).....(((((.....))))).-...--......--------- ( -30.40) >DroYak_CAF1 5675 96 + 1 UGCGAAGGCCUGCGGUGUCCAGUGCCAAGCAGGUGAGAAAUUGCUUAAUUGUGAUUUCAACGCAUAUCAGUCAGAGGUCCUGACC-CCACAAUCGCA--------- .((((..(((((((((.......)))..))))))..(((((..(......)..)))))...........(((((.....))))).-......)))).--------- ( -30.70) >DroAna_CAF1 509 102 + 1 UGCGAAAGCCUGCGGUGUC-UGUGCCAAACAGGUGAGAAAUUGCUUAAUUGUGAUUUCAACGCAUAUCAACAAGAGGUCUUGACC-UCA--GACUGCCCCCGGCUU .....(((((.(.((((((-((((((.....)))..(((((..(......)..)))))...))..........(((((....)))-)))--))).))).).))))) ( -32.00) >consensus UGCGAAAGCCUGCGGUGUC_UGUGCCAAGCAGGUGAGAAAUUGCUUAAUUGUGAUUUCAACGCAUAUCAGUCAGAGGUCCUGACC_CCA__GCCAGA_________ ((((...(((((((((.......)))..))))))..(((((..(......)..)))))..)))).....(((((.....)))))...................... (-26.40 = -26.82 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:17 2006