Locus 408

Sequence ID 2R_DroMel_CAF1
Location 2,424,686 – 2,424,781
Length 95
Max. P 0.918350
window798

overview

Window 8

Location 2,424,686 – 2,424,781
Length 95
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 83.18
Mean single sequence MFE -30.38
Consensus MFE -21.90
Energy contribution -23.40
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -2.16
Structure conservation index 0.72
SVM decision value 1.12
SVM RNA-class probability 0.918350
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2424686 95 - 20766785
CCCUACGGUGUGUGGCAUACACUGAGCACAAUGUGGGGGGGGGGGGGGAUAGUGCCCAUUCAGGCAGAUAAAUGCACUUGAGUGGCAUGCUCUUA
(((((((.(((((..((.....)).))))).))))))).....(((((...(((((.(((((((((......))).).)))))))))).))))). ( -37.00)
>DroSec_CAF1 80866 84 - 1
CCCUACGGUGUGUGGCAUACACUGAGCACAAUGCGGAGG-----------AGUGCCCAUUCAGGCAGAUAAAUGCACUUGAGUGGCAUGCUCUUA
.((..((((((((...)))))))).((.....))))(((-----------(((..(((((((((((......))).).)))))))...)))))). ( -29.10)
>DroSim_CAF1 38164 84 - 1
CCCUACGGUGUGUGGCAUACACUGAGCACAAUGCGGGGG-----------AGUGCCCAUUCAGGCAGAUAAAUGCACUUGAGUGGCAUGCUCUUA
((((.((((((((...)))))))).((.....))))))(-----------(((..(((((((((((......))).).)))))))...))))... ( -31.30)
>DroYak_CAF1 37794 75 - 1
CCAUACGUUGUGUGG-----------CACAAUGUGGGGU---------AGUGUACCCAUUCAGGCAGAUAAAUGCACUUGAGUGGCAUGCUCUUA
((.(((((((((...-----------)))))))))))..---------((.(((.(((((((((((......))).).)))))))..))).)).. ( -24.10)
>consensus
CCCUACGGUGUGUGGCAUACACUGAGCACAAUGCGGGGG___________AGUGCCCAUUCAGGCAGAUAAAUGCACUUGAGUGGCAUGCUCUUA
(((((((.(((((............))))).))))))).............(((((.(((((((((......))).).))))))))))....... (-21.90 = -23.40 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:50 2006