Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,454,368 – 13,454,473 |
Length | 105 |
Max. P | 0.599247 |
Location | 13,454,368 – 13,454,473 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.32 |
Mean single sequence MFE | -22.70 |
Consensus MFE | -15.82 |
Energy contribution | -16.02 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.15 |
Mean z-score | -2.83 |
Structure conservation index | 0.70 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599247 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13454368 105 - 20766785 AAAUGGAAAAAUGAAAUAAUUUU-UCA--GCGCUUCUUUUAUGCUAUUGACAACUUGCUAAGAAGCCUU--UAAAAUUGAUUCGUUUUCCUUUUUCAUUUUUU---------UUU-CCGC ....((((((.((((.(((((((-..(--(.(((((((....((............)).))))))))).--.))))))).)))))))))).............---------...-.... ( -23.50) >DroSec_CAF1 3253 105 - 1 AAAUGGAAAAAUGAAAUAAUUUU-UCA--GCGCUUCUUUUAUGCUAUUGACAACUCGCUAAGAAGCCUU--UAAAAUUGAUUCGUUUUCCUUUUCCAUUUUUU---------UUU-UCGC (((((((((((((((.(((((((-..(--(.(((((((....((............)).))))))))).--.))))))).))))).....))))))))))...---------...-.... ( -25.10) >DroSim_CAF1 3416 103 - 1 AAAUGGAAAGAUGAAAUAAUUUU-UCA--GCGCUUCUUUUAUGCUAUUGACAACUCGCUAAGAAGCCUU--UAAAAUUGAUUCGUUUUCCUUUUCCAUUUUUU-----------U-UCUC (((((((((((((((.(((((((-..(--(.(((((((....((............)).))))))))).--.))))))).)))))).....)))))))))...-----------.-.... ( -25.50) >DroEre_CAF1 3725 102 - 1 AAAUGGAAAAAUGAAAUAAUUUU-UCA--GCGCUUCUUUUAUGCUAUUGACAACUCGCUAAGAAGCCUU--UAAAAUUGAUUCGUUUUCCUUUUACAUUUUU------------U-UCGC ....((((((.((((.(((((((-..(--(.(((((((....((............)).))))))))).--.))))))).))))))))))............------------.-.... ( -22.90) >DroYak_CAF1 3853 114 - 1 AAAUGGAAAAAUGAAAUAAUUUU-UCA--GCGCUUCUUUUAUGCUAUUGACAACUCGCUGAGAAGCCUU--UAAAAUUGAUUCGAUUUCCUUUUAUAUUUUUUCUACGUUUUUGU-UCGC ....(((((..((((.(((((((-..(--(.(((((((....((............)).))))))))).--.))))))).)))).))))).........................-.... ( -20.90) >DroPer_CAF1 2957 108 - 1 AAAUGGAAA-AUUAAAUAGUUUUUUCAUGGCGGUUCGU-AGUGUUAUUGACAAGU-GCUGAGAAGCCUUAUAAAAAUAGAUUCGUUUUUCCUUUAUAUAUUUU---------GCUGUCUG ....(((((-(...(((.((((((....(((..(((((-(.((((...))))..)-)).)))..)))....))))))..)))...))))))............---------........ ( -18.30) >consensus AAAUGGAAAAAUGAAAUAAUUUU_UCA__GCGCUUCUUUUAUGCUAUUGACAACUCGCUAAGAAGCCUU__UAAAAUUGAUUCGUUUUCCUUUUACAUUUUUU_________U_U_UCGC ....(((((.(((((.(((((((......(.(((((((....((............)).)))))))).....))))))).)))))))))).............................. (-15.82 = -16.02 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:12 2006