Locus 4073

Sequence ID 2R_DroMel_CAF1
Location 13,448,696 – 13,448,786
Length 90
Max. P 0.534953
window6559

overview

Window 9

Location 13,448,696 – 13,448,786
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 80.33
Mean single sequence MFE -20.17
Consensus MFE -12.88
Energy contribution -14.96
Covariance contribution 2.08
Combinations/Pair 1.20
Mean z-score -1.64
Structure conservation index 0.64
SVM decision value 0.00
SVM RNA-class probability 0.534953
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13448696 90 - 20766785
CGGUUGGGAUUCUAUUAUGGAAUAGUCUGUCAGCCGGGAAAGUGUGGACACAUCGAAAAUGGGUGUGAAUAGAAUAUGCCAUGUGUAAAA
(((((((.(..(((((....)))))..).)))))))((...((((...((((((.......))))))......)))).)).......... ( -22.80)
>DroSec_CAF1 12457 90 - 1
CGUUUGGGAUUCUAUUAUGGAAUAGUGUGUCAGCCGGGAAAGUGUGGACACAUCGAAAAUGGGUGUGAAUAGAAUAUGCCAUGCGUAAAA
(((.(((.((((((((......(((((((((.(((......).)).)))))))......))......))))))))...))).)))..... ( -20.50)
>DroEre_CAF1 12664 90 - 1
CGGUUGGGAUUCUAUUAUGGAAUAGUUUGUCAGCCGGGAAAGUGUGGACACAUCGGAAAUGGGUGUGAAUAGAAUAUGCCAUGCGUAAAA
(((((((.(..(((((....)))))..).))))))).....((((((.((((((.......))))))...........))))))...... ( -25.80)
>DroYak_CAF1 12725 90 - 1
CGGUUGGGAUUCUAUUAUGGAAUAGUUUGUCAGCCGGGAAAGUGUGGACACAUCGAGAAUGGGUGUGAAUGGGUUAUGCCAAGCGUAAAA
(((((((.(..(((((....)))))..).)))))))............((((((.......))))))......((((((...)))))).. ( -24.30)
>DroAna_CAF1 12642 82 - 1
UGGUUAGAAAUCUAUUAUUAAAUAGUGGGACAAGCGUCAAAAUAAGGGA-----UAAAAUGGCAGCUAAAAAAAUA---CAAAGGUAAAA
..........((((((((...))))))))...(((((((..........-----.....)))).))).........---........... (  -7.46)
>consensus
CGGUUGGGAUUCUAUUAUGGAAUAGUGUGUCAGCCGGGAAAGUGUGGACACAUCGAAAAUGGGUGUGAAUAGAAUAUGCCAUGCGUAAAA
(((((((.(..(((((....)))))..).))))))).....((((((.((((((.......))))))...........))))))...... (-12.88 = -14.96 +   2.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:05 2006