Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,444,844 – 13,444,937 |
Length | 93 |
Max. P | 0.999834 |
Location | 13,444,844 – 13,444,937 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 89.76 |
Mean single sequence MFE | -19.50 |
Consensus MFE | -17.94 |
Energy contribution | -17.94 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.71 |
Structure conservation index | 0.92 |
SVM decision value | 4.20 |
SVM RNA-class probability | 0.999834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13444844 93 + 20766785 GCGGGCAAGUUUCACUCAGCUGCCGUUUUGUUUUUUUUUUUUUUACUCUAUGCUACCAACUUUUUGCAACUUUUGUGGCAACUUUUUGCCACA ...((((.(((......)))))))..........................(((............))).....((((((((....)))))))) ( -18.40) >DroSec_CAF1 8762 90 + 1 GAGGGCAAGUUUCACUCAGCUGCCGCUUC---UUUUUUUUUUUUACUCUAUGCUACCAACUUUUUGCAACUUUUGUGGCAACUUUUUGCCACA (((((((.(((......))))))).))).---..................(((............))).....((((((((....)))))))) ( -19.20) >DroSim_CAF1 9414 87 + 1 GAGGGCAAGUUUCACUCAGCUGCCGUU------UUUUUUUUUUUACUCUAUGCUACCAACUUUUUGCAACUUUUGUGGCAACUUUUUGCCACA ((.((((.(((......))))))).))------.................(((............))).....((((((((....)))))))) ( -18.60) >DroEre_CAF1 8840 82 + 1 GAGGGCAAGUUUCACUCAGCUGCCUUU-----------UUUUUUACUCUAUGCCACCAACUUUUUGCAACUUUUGUGGCAACUUUUUGCCACA (((((((.(((......))))))))))-----------............(((............))).....((((((((....)))))))) ( -19.10) >DroYak_CAF1 8879 93 + 1 GCGGGCAAGUUUCACUCAGCUGCCUGUUCUUUUUUUUUAUUUUUACGCUGUGCUACCAACUUUUUGCAACUUUUGUGGCAACUUUUUGCCACA (((((((.(((......)))))))))).......................(((............))).....((((((((....)))))))) ( -22.20) >consensus GAGGGCAAGUUUCACUCAGCUGCCGUUU____UUUUUUUUUUUUACUCUAUGCUACCAACUUUUUGCAACUUUUGUGGCAACUUUUUGCCACA ...((((.(((......)))))))..........................(((............))).....((((((((....)))))))) (-17.94 = -17.94 + -0.00)
Location | 13,444,844 – 13,444,937 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 89.76 |
Mean single sequence MFE | -20.04 |
Consensus MFE | -18.74 |
Energy contribution | -18.58 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -2.47 |
Structure conservation index | 0.94 |
SVM decision value | 3.93 |
SVM RNA-class probability | 0.999710 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13444844 93 - 20766785 UGUGGCAAAAAGUUGCCACAAAAGUUGCAAAAAGUUGGUAGCAUAGAGUAAAAAAAAAAAAAACAAAACGGCAGCUGAGUGAAACUUGCCCGC ((((((((....))))))))...(((((.........)))))..........................(((..((.(((.....)))))))). ( -19.10) >DroSec_CAF1 8762 90 - 1 UGUGGCAAAAAGUUGCCACAAAAGUUGCAAAAAGUUGGUAGCAUAGAGUAAAAAAAAAAAA---GAAGCGGCAGCUGAGUGAAACUUGCCCUC ((((((((....)))))))).(((((.((...(((((...((...................---...))..)))))...)).)))))...... ( -21.15) >DroSim_CAF1 9414 87 - 1 UGUGGCAAAAAGUUGCCACAAAAGUUGCAAAAAGUUGGUAGCAUAGAGUAAAAAAAAAAA------AACGGCAGCUGAGUGAAACUUGCCCUC ((((((((....))))))))...(((((.........)))))..................------...(((((.(.......).)))))... ( -18.90) >DroEre_CAF1 8840 82 - 1 UGUGGCAAAAAGUUGCCACAAAAGUUGCAAAAAGUUGGUGGCAUAGAGUAAAAAA-----------AAAGGCAGCUGAGUGAAACUUGCCCUC ((((((((....)))))))).(((((.((...(((((.(.((.....))......-----------...).)))))...)).)))))...... ( -19.50) >DroYak_CAF1 8879 93 - 1 UGUGGCAAAAAGUUGCCACAAAAGUUGCAAAAAGUUGGUAGCACAGCGUAAAAAUAAAAAAAAAGAACAGGCAGCUGAGUGAAACUUGCCCGC .(.((((...((((..(((...((((((.....((((......))))((.................))..))))))..))).))))))))).. ( -21.53) >consensus UGUGGCAAAAAGUUGCCACAAAAGUUGCAAAAAGUUGGUAGCAUAGAGUAAAAAAAAAAAA____AAACGGCAGCUGAGUGAAACUUGCCCUC ((((((((....))))))))...(((((.........)))))...........................(((((.(.......).)))))... (-18.74 = -18.58 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:04 2006