Locus 4070

Sequence ID 2R_DroMel_CAF1
Location 13,444,075 – 13,444,173
Length 98
Max. P 0.985257
window6555

overview

Window 5

Location 13,444,075 – 13,444,173
Length 98
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 71.16
Mean single sequence MFE -21.80
Consensus MFE -13.84
Energy contribution -15.84
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -2.00
Structure conservation index 0.63
SVM decision value 2.00
SVM RNA-class probability 0.985257
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13444075 98 - 20766785
ACAGCACUGCCCGCGUGCAGUUCAAUUGAAUUUUAGUGGGGAACUUGUGCUGCCA----GCUCACCUCCUCCCAAACCAAUCACCACCCACUCCACCUACAC
.(((((((.(((((....(((((....)))))...))))).)....))))))...----........................................... ( -19.40)
>DroSec_CAF1 8025 77 - 1
GCAGCACUGCCCGCUUGCAGUUCAAUUGAAUUUUAGUGGGGAACUUGUGCUGCCA-------------------------CUACCACCCACUCCACCUACAC
((((((((.((((((...(((((....)))))..)))))).)....)))))))..-------------------------...................... ( -24.10)
>DroSim_CAF1 8670 77 - 1
GCAGCACUGCCCGCGUGCAGUUCAAUUGAAUUUUAGUGGGGAACUUGUGCUGCCA-------------------------CUACCACCCACUCCACCUACAC
((((((((.(((((....(((((....)))))...))))).)....)))))))..-------------------------...................... ( -22.70)
>DroEre_CAF1 8034 78 - 1
GCUGCACUGCCCGCGUGCAGUUCAAUUGAAUUUUAGUGGGG-----------------AGCUCACCUCUUACU-------UCAGCAACGGCUCCACCUACAC
(((((((.......)))))))..............((((((-----------------((((...((......-------..))....)))))).)).)).. ( -21.20)
>DroYak_CAF1 8083 92 - 1
GCUGCACUACCCGCGUGCAGUUCAAUUGAAUUUUAGUGGUAAACUUGUGCUGCCAGCCAGCUCACCUCUUCCU-------UCAGCACCCACUGCACACA---
(((((((.......)))))))............((((((.......((((((..((..((.......))..))-------.))))))))))))......--- ( -21.61)
>consensus
GCAGCACUGCCCGCGUGCAGUUCAAUUGAAUUUUAGUGGGGAACUUGUGCUGCCA____GCUCACCUC_U_C________UCACCACCCACUCCACCUACAC
(((((((..(((((.((.(((((....))))).)))))))......)))))))................................................. (-13.84 = -15.84 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:01 2006