Locus 4068

Sequence ID 2R_DroMel_CAF1
Location 13,437,531 – 13,437,623
Length 92
Max. P 0.864512
window6553

overview

Window 3

Location 13,437,531 – 13,437,623
Length 92
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 93.34
Mean single sequence MFE -25.98
Consensus MFE -22.22
Energy contribution -22.22
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -1.52
Structure conservation index 0.86
SVM decision value 0.84
SVM RNA-class probability 0.864512
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13437531 92 + 20766785
CGGUUCAGGUUUCAAGAGCUUCACGCCUAAUUAAUUGCCAUAAACUCUUGUCUGGCAAUUGAAGGCCACUCCCCU---UGCGCUCUUUUUGGGCG
..(((((((....((((((.....((((..((((((((((...((....)).))))))))))))))((.......---)).))))))))))))). ( -26.40)
>DroSec_CAF1 1546 92 + 1
CGGUUCAGGUUUCAAGAGCUUCACGCCUAAUUAAUUGCCACAAACUCUUGUCUGGCAAUUGGAGGCCACUCCCCU---CGCGUUCUUUUUGGGCG
.(((((.........)))))...(((((((..(((((((((((....))))..)))))))((((....))))...---..........))))))) ( -26.20)
>DroSim_CAF1 2061 92 + 1
CGGUUCAGGUUUCAAGAGCUUCACGCCUAAUUAAUUGCCAUAAACUCUUGUCUGGCAAUUGGAGGCCACUCCCCU---CGCGCUCUUUUUGGGCG
..(((((((....((((((.............((((((((...((....)).))))))))((((....))))...---...))))))))))))). ( -26.70)
>DroEre_CAF1 1523 91 + 1
CGGUUCAGGUUUCAAGAGCUUCACGCCUAAUUAAUUGCCAUAAACUCUUGUCUGGCAAUUGGAGGCCACUCCCCU---CGCGCUCUCC-UAGCUG
(((((.(((.....(((((.............((((((((...((....)).))))))))((((....))))...---...)))))))-)))))) ( -26.00)
>DroYak_CAF1 1502 94 + 1
CGGUUCAGGUUUCAAGAGCUUCACGCCUAAUUAAUUGCCAUAAACUCUUGUCUGGCAAUUGGAGGCCACUCCCCUUUUUGCGCUCCUU-UGGGUG
.(((((.........)))))...(((((((..((((((((...((....)).))))))))((((((.............)).)))).)-)))))) ( -24.62)
>consensus
CGGUUCAGGUUUCAAGAGCUUCACGCCUAAUUAAUUGCCAUAAACUCUUGUCUGGCAAUUGGAGGCCACUCCCCU___CGCGCUCUUUUUGGGCG
.(((((.........)))))...((((((...((((((((...((....)).))))))))((((....)))).................)))))) (-22.22 = -22.22 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:59 2006