Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,435,700 – 13,435,805 |
Length | 105 |
Max. P | 0.935024 |
Location | 13,435,700 – 13,435,805 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 73.88 |
Mean single sequence MFE | -21.66 |
Consensus MFE | -17.52 |
Energy contribution | -17.88 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.06 |
Mean z-score | -1.09 |
Structure conservation index | 0.81 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13435700 105 - 20766785 CACACCCUUCUCCUUUC--ACAGAAAUCAACCAAGCAACUACCCACCCACCAACGCAUUUGGCCACGAAAAGUGGCUUAAAGCGCGCUUAUAACUGUUGAGUGGUUU .......((((......--..))))...(((((..((((..............(((.((.((((((.....)))))).)).)))...........))))..))))). ( -23.71) >DroSec_CAF1 32899 88 - 1 CCCA------UCCUUUC--ACAGAAAUCAA-----------CCCACCCACCAACGCAUUUGGCCACGAAAAGUGGCUUAAAGCGCGCUUAUAACUGUUGAGUGGUUU ....------.......--...........-----------.....((((((((((.((.((((((.....)))))).)).))..(.......).)))).))))... ( -20.20) >DroEre_CAF1 34592 99 - 1 CACACCC-----GCUUC--GCAGAAAUGAACCAAGCAACUACCCAGCCACCCACGUAUUU-GCCACGAAAAGUGGCUUAAAGCGCGCUUAUAACUGUUGAGUGGUUU .....((-----((((.--((((..((((.....((.........))....(.(((.((.-(((((.....)))))..)).))).).))))..)))).))))))... ( -23.90) >DroYak_CAF1 34508 93 - 1 -------------UUUCGCCCAGGAAUCAACCAAGCUACUGCCCAGCCACCCACGUAUUU-GCCACGAAAAGUGGCUUAAAGCGCGCUUAUAACUGUUGAGUGGUUU -------------.........((......))((((((((...(((.....(.(((.((.-(((((.....)))))..)).))).).......)))...)))))))) ( -20.00) >DroAna_CAF1 31565 83 - 1 UGCU--AACCUCCUUUA----------------------UGCGAACCCCCCCACGCACUCGGCCACGAAAAGUGGCUUAAAGCGCGCUUAUAACUGUUGAGUGGUUU .(((--...........----------------------((((..........))))...((((((.....))))))...))).((((((.......)))))).... ( -20.50) >consensus CACA______UCCUUUC__ACAGAAAUCAACCAAGC_ACUACCCACCCACCCACGCAUUUGGCCACGAAAAGUGGCUUAAAGCGCGCUUAUAACUGUUGAGUGGUUU .....................................................(((.((.((((((.....)))))).)).)))((((((.......)))))).... (-17.52 = -17.88 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:59 2006