Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,415,030 – 13,415,137 |
Length | 107 |
Max. P | 0.835759 |
Location | 13,415,030 – 13,415,137 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 85.90 |
Mean single sequence MFE | -18.61 |
Consensus MFE | -13.73 |
Energy contribution | -13.73 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.74 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13415030 107 + 20766785 AAAAGGCAAUGAACAAAUUUAGCACUUUAAAUAUUGACACUUGUUACAUAAACUUCCACUUAGCGCAGUUAUUAC----AGUCACUAAUUGGAGUGCAAACAAUUAAAUUC .....................(((((((((.((.((((....((((..............))))...((....))----.)))).)).))))))))).............. ( -16.04) >DroSec_CAF1 12427 94 + 1 -------------CAAAUUUAGCACUUUAAAUAUUGACACUUGAUACAUAAACUUGCACUUACCGCAGUUAUUAC----AGUCACUAAUUGGAGUGCAAACAAUUAAAUUC -------------........(((((((((.((.((((...(((((.....(((.((.......)))))))))).----.)))).)).))))))))).............. ( -18.30) >DroSim_CAF1 13619 94 + 1 -------------CAAAUUUAGCACUUUAAAUAUUGACACUUGAUACAUAAACUUGCACUUAGCGCAGUUAUUAC----AGUCACUAAUUGGAGUGCAAACAAUUAAAUUC -------------........(((((((((.((.((((...(((((.....((((((.....))).)))))))).----.)))).)).))))))))).............. ( -19.20) >DroEre_CAF1 12719 111 + 1 AAAAGGCAUUCAACAAAUUUAGCACUUUAAAUAUUGACAUUUGAUACAUAAACUUCCACUCAGUGCAGUUAUUACUAAUAGUCACUAAUUGGAGUGCAAACAAUUAAAUUC .....................(((((((((.((.((((((((((((.....(((.......))).....)))))..))).)))).)).))))))))).............. ( -16.90) >DroYak_CAF1 12780 111 + 1 AAAAGGCAUUUACCAAAUUUGGCACUUUAAAUAUUGACACUUGAUGCAUAAACUGCCACUUAGUGCAGUUAUUACUAAUAGUCACUAAUUGGAGUGCAAACAAUUAUAUUC .....(((((..((((...(((((.((((..(((..(...)..)))..)))).))))).(((((((.((((....)))).).))))))))))))))).............. ( -22.60) >consensus AAAAGGCA_U_A_CAAAUUUAGCACUUUAAAUAUUGACACUUGAUACAUAAACUUCCACUUAGCGCAGUUAUUAC____AGUCACUAAUUGGAGUGCAAACAAUUAAAUUC .....................(((((((((.((.((((............((((............))))..........)))).)).))))))))).............. (-13.73 = -13.73 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:53 2006