Locus 4063

Sequence ID 2R_DroMel_CAF1
Location 13,413,178 – 13,413,270
Length 92
Max. P 0.636713
window6545

overview

Window 5

Location 13,413,178 – 13,413,270
Length 92
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 77.32
Mean single sequence MFE -27.47
Consensus MFE -18.97
Energy contribution -20.00
Covariance contribution 1.03
Combinations/Pair 1.24
Mean z-score -1.14
Structure conservation index 0.69
SVM decision value 0.21
SVM RNA-class probability 0.636713
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13413178 92 - 20766785
-----UUUGCAUUGGCAUGG---GCAUUUCACUUACGGGUGCCAUCGAACCGGGUGGCGAUGGUGUCCAGGAAUGUGUUCUGGGGCGCUAGCAGCCCCUU
-----..(((....))).((---(((((((.((...(((..((((((..((....))))))))..)))))))).)))))).(((((.......))))).. ( -35.20)
>DroGri_CAF1 22931 97 - 1
AAAUGUUUGUGUAUA---AUAUAUCUUUUGACUUACGCGUGCCAUCGAACCGUGUGGCAAUUGUGUCCAGGAAUGUGUUCUGGGGCGCGAGCAGCCCCUU
...(((((((((...---................((((.((((((........))))))...))))((((((.....)))))).)))))))))....... ( -27.60)
>DroWil_CAF1 18734 92 - 1
-----UUUAUGUUUUUUUGU---GUUUUUCACUUACGCGUUCCAUCGAAGCGUGUGGCAAUUGUGUCCAAGAAUGUAUUUUGGGGCGCUAGCAGCCCCUU
-----..(((((((((..((---(.....)))(((((((((.......)))))))))...........)))))))))....(((((.......))))).. ( -22.80)
>DroMoj_CAF1 16244 89 - 1
-----UUUAUAUUUA---AU---UCAUUCUACUUACGCGUGCCAUCGAAGCGUGUAGCGAUUGUGUCCAGGAAUGUAUUUUGGGGCGCUAACAGCCCCUU
-----..(((((((.---..---.(((.....((((((((.........)))))))).....))).....)))))))....(((((.......))))).. ( -23.90)
>DroAna_CAF1 10411 92 - 1
-----UUAGCAUUGGCAUUA---GCAUUUCACUUACGAGUGCCAUCGAAGCGGGUGGCGAUUGUGUCCAGGAAUGUGUUCUGGGGCGCUAGCAGCCCCUU
-----...((....))....---(((((((...(((((.(((((((......))))))).)))))....))))))).....(((((.......))))).. ( -32.60)
>DroPer_CAF1 11160 75 - 1
-------------------------AUUUCACUUACGCGUGCCAUCGAACCGUGUGGCUAUGGUGUCCAGAAAUGUGUUUUGGGGCGCUAGCAGCCCCUU
-------------------------.........(((((.(........))))))((((.((((((((.((((....)))).))))))))..)))).... ( -22.70)
>consensus
_____UUUGUAUUUA___AU___GCAUUUCACUUACGCGUGCCAUCGAACCGUGUGGCGAUUGUGUCCAGGAAUGUGUUCUGGGGCGCUAGCAGCCCCUU
........................((((((....((((.((((((........))))))...))))...))))))......(((((.......))))).. (-18.97 = -20.00 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:52 2006