Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,408,870 – 13,408,990 |
Length | 120 |
Max. P | 0.621768 |
Location | 13,408,870 – 13,408,990 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.39 |
Mean single sequence MFE | -40.27 |
Consensus MFE | -23.20 |
Energy contribution | -23.18 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.52 |
Mean z-score | -2.08 |
Structure conservation index | 0.58 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621768 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13408870 120 + 20766785 UCCUGCGCGGCAGGACGAUUUUUAUGAAGAAAUCAUGUUCGGCAACAGGUUGUUCGAGUACGAAUUCCAUGUGCCAAGUGCGGCGUUUGGUACUUUUGCUUAUGCCACAAGUGAACUCCU ((((((...)))))).(((((((....)))))))..((((((((.((((..(((((....))))).)).))))))...((.(((((..((((....)))).))))).))...)))).... ( -39.00) >DroVir_CAF1 18550 120 + 1 UGCGACGGGGUAUUACAAUGAGCAUGUGAAACUCAUGCUCGUUAAGCGGUUCCAGUAGCGCGAAUUCCAUGUGCAUAGUGCGCCGUUUGGGAUUCUUGCUGAGACCGCAAUGGAAACUCU ......(((((.....((((((((((.......))))))))))..(((((..((((((...((((((((.((((.....))))....))))))))))))))..))))).......))))) ( -48.20) >DroSec_CAF1 6368 120 + 1 UCCUGCGCGGCAGGAUGAUUUUCAUAAUGAAAUCAUGUUCGGCAACAGGUUGUUCGAGUACGAAUUCCAUGUGCCAAGUGCGGCGUUUGGCACUUUUGCUUAUGCCACAAGUGAACUCCU ((((((...))))))(((((((......))))))).((((((((.((((..(((((....))))).)).))))))...((.(((((..((((....)))).))))).))...)))).... ( -40.70) >DroSim_CAF1 6999 120 + 1 UCCUGCGCGGCAGGAUGAUUUUCAUAAAGAAAUCAUGUUCGGCAACAGGUUGUUCGAGUACGAAUUCCAUGUGCCAAGUGCGGCGUUUGGCACUUUUGCUUAUGCCACAAGUGAACUCCU ((((((...))))))(((((((......))))))).((((((((.((((..(((((....))))).)).))))))...((.(((((..((((....)))).))))).))...)))).... ( -40.90) >DroEre_CAF1 6329 120 + 1 GCCUGCGCGGCAGGACGAUUUUCAUAAAGAAAUCAUGUUCGGCAACUGGUUGUUUGAGUACGAACUCCAUGUGCCAAGUGCGGCGCUUGACACUUUUGCUCACGCCACAAUUAAACUCCU (((.((((....((((((((((......))))))..))))((((..(((..(((((....))))).)))..))))..)))))))((.(((((....)).))).))............... ( -34.20) >DroYak_CAF1 6416 120 + 1 GUCGGCGUGGCAGGAUGAUUUUCAUAAAGAAAUCAUGUUCGGCAACAGGUUGUUUGAGCUUAAACUCCAUGUGCCAGGUGCGGCGUUUGGCACUUUUGCUAACGCCACAAUUGAAGUCCU ((.(((((((((((((((((((......))))))).(((((((((....))).))))))......)))..((((((..((...))..))))))...)))).)))))))............ ( -38.60) >consensus UCCUGCGCGGCAGGACGAUUUUCAUAAAGAAAUCAUGUUCGGCAACAGGUUGUUCGAGUACGAAUUCCAUGUGCCAAGUGCGGCGUUUGGCACUUUUGCUUAUGCCACAAGUGAACUCCU ....((((.((((((((..((((.....))))...)))))((((...((..(((((....))))).))...))))...))).)))).((((............))))............. (-23.20 = -23.18 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:51 2006