Locus 4060

Sequence ID 2R_DroMel_CAF1
Location 13,395,187 – 13,395,285
Length 98
Max. P 0.994593
window6542

overview

Window 2

Location 13,395,187 – 13,395,285
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 91.91
Mean single sequence MFE -29.98
Consensus MFE -24.76
Energy contribution -25.84
Covariance contribution 1.08
Combinations/Pair 1.06
Mean z-score -2.47
Structure conservation index 0.83
SVM decision value 2.49
SVM RNA-class probability 0.994593
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13395187 98 - 20766785
ACAAUAAUGUUGGCAAGAUGCGCCACGAAUUGAAGCAAUGUUUAGUUACGUUGAACCUUUGUGGUCGUCUUGUCGAAGAUUGGUUGCAAUUGUCCAGA
.((((....(((((((((((.((((((((......((((((......))))))....)))))))))))))))))))..))))................ ( -32.40)
>DroSec_CAF1 12765 95 - 1
---AUAAUGUUGGCAAGAUGCGCCACGAAUUGAAGCAAUGUUUAGUUACGUUGAACCUUUGUGGUCGUCUUGUCGAAGAUUGGUUGCAAUUGUCCAGA
---......(((((((((((.((((((((......((((((......))))))....)))))))))))))))))))...((((..((....)))))). ( -31.20)
>DroSim_CAF1 13583 95 - 1
---AUAAUGUUGGCAAGAUGCGCCACGAAUUGAAGCAAUGUUUAGUUACGUUGAACCUUUGUGGUCGUCUUGUCGAAGAUUGGUUGCAAUUGUCCAGA
---......(((((((((((.((((((((......((((((......))))))....)))))))))))))))))))...((((..((....)))))). ( -31.20)
>DroEre_CAF1 13141 98 - 1
AUGGCAAUGUUGGGAAGAUGCGCCACGAAUUAAAGAAGUGCUUGGUUACGUUGAACCUUUGUGGUCGUCUUGUCGAAUAUUGGUUGCAAUUGUCCAGA
.((((((((((((.((((((.((((((((...(((.....)))((((......)))))))))))))))))).)).)))))))...((....))))).. ( -26.70)
>DroYak_CAF1 13190 98 - 1
AUGAUAAUGUUGGCAAGAUGCGCCACGAAUUGAAGAAAUGCUUGGUUACAUUGAACCUUUGUGGAAGUCUUGUCGAACAUUGGUUGCAAUUGUCCAGA
.((.(((((((((((((((...(((((((...(((.....)))((((......)))))))))))..)))))))).)))))))....)).......... ( -28.40)
>consensus
A__AUAAUGUUGGCAAGAUGCGCCACGAAUUGAAGCAAUGUUUAGUUACGUUGAACCUUUGUGGUCGUCUUGUCGAAGAUUGGUUGCAAUUGUCCAGA
.........(((((((((((.((((((((......((((((......))))))....)))))))))))))))))))...((((..((....)))))). (-24.76 = -25.84 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:49 2006