Locus 406

Sequence ID 2R_DroMel_CAF1
Location 2,416,055 – 2,416,166
Length 111
Max. P 0.975770
window796

overview

Window 6

Location 2,416,055 – 2,416,166
Length 111
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.12
Mean single sequence MFE -30.28
Consensus MFE -16.26
Energy contribution -19.66
Covariance contribution 3.39
Combinations/Pair 1.20
Mean z-score -2.24
Structure conservation index 0.54
SVM decision value 1.76
SVM RNA-class probability 0.975770
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2416055 111 + 20766785
CACAUGGCAUAAUGCAGUGCAAACAGUAUGUCCCACAGGGCGUAUGAAAUUCUCCCGUUGUGUGCAGCCUCUUUGCGUAAAAU----AGAUGCAAAUUAAUAUGCAUUU-----CUAUGC
..(((((...((((((.((((.(((((((((((....))))))))((.....))....))).)))).....(((((((.....----..)))))))......)))))).-----))))). ( -28.50)
>DroSec_CAF1 72192 106 + 1
CACAUGGCAUAAUGCAGUGCAAACAGUAUGUCCCACAGGGCGUAUGAAAUUCUCCCGUUUUGUGCAU-----CUGCGCAAAAU----AGAUGCAAAUUAAUAUGCAUUU-----CUAUGC
..(((((...((((((.((((....((((((((....)))))))).....(((...(((((((((..-----..)))))))))----)))))))........)))))).-----))))). ( -32.10)
>DroSim_CAF1 29419 111 + 1
CACAUGGCAUAAUGCAGUGCAAACAGUAUGUCCCACAGGGCGUAUGAAAUUCUCCCGUUUUGUGCAGCCCCCCUGCGCAAAAU----AGAUGCAAAUUAAUAUGCAUUU-----CUAUGC
..(((((...((((((.((((....((((((((....)))))))).....(((...(((((((((((.....)))))))))))----)))))))........)))))).-----))))). ( -35.20)
>DroEre_CAF1 28239 94 + 1
CACAAGGCAUUAUGCAGUGCAAACAGU-UGUCCCACGGGGCGUAUGAAAAUCUG--------------------CCGCAAAAUAUGUAGAUGCAAAUUAAUAUGCAUUU-----CUGUGC
((((.((((((((((.((....))...-.((((....)))))))))).....))--------------------))...........(((((((........)))))))-----.)))). ( -23.90)
>DroYak_CAF1 28508 111 + 1
CACAAGGCAUUAUGCUGUGCAAACAGUAUGUCCCACAGGGCGUAUGAAAUGCUCUCGUUUUGUGCAGCCCCUUUUCGCAGAAU----AGAUGCAAAUUAAUAUGCAUUU-----CUAUGC
.....((...((((((((....))))))))..))...(((((((..(((((....)))))..))).))))......(((....----(((((((........)))))))-----...))) ( -33.90)
>DroPer_CAF1 24195 103 + 1
CACGUCGCAUUAGCCAGUGAAAA-AG--CGUCCU----GGCCUAUUCC--UGGCCCCCUUUACGCAGGUUCUUUG----AGAG----CGAUGCAAAUGAAUAUGCACUCACCACCUGUGU
............(((((.(((..-.(--(.....----.))...))))--)))).......((((((((....((----((.(----((((........)).))).))))..)))))))) ( -28.10)
>consensus
CACAUGGCAUAAUGCAGUGCAAACAGUAUGUCCCACAGGGCGUAUGAAAUUCUCCCGUUUUGUGCAGCC_CUUUGCGCAAAAU____AGAUGCAAAUUAAUAUGCAUUU_____CUAUGC
......((((.......((((....((((((((....)))))))).....(((...(((((((((((.....)))))))))))....))))))).......))))............... (-16.26 = -19.66 +   3.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:48 2006