Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,373,033 – 13,373,128 |
Length | 95 |
Max. P | 0.583599 |
Location | 13,373,033 – 13,373,128 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 81.49 |
Mean single sequence MFE | -20.20 |
Consensus MFE | -15.05 |
Energy contribution | -15.05 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.06 |
Mean z-score | -1.55 |
Structure conservation index | 0.75 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583599 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13373033 95 + 20766785 GUUCUAUGUU---UUUUUUUUUAACAUUAAGCCAACUCAAUGUGCAGGGCCAGAAAUGAUGGCAAAAACCACAUAAUCUUUUUAUUUGGACAUCGCAU (((..(((((---.........)))))..))).........((((...((((.......)))).....(((.((((.....)))).))).....)))) ( -16.90) >DroSec_CAF1 71831 94 + 1 GUUCUGUUU----UUUUUUUUAAACAUUAAGCCAACUCAAUGUGCAGGGCCGGAAAUGCUGGCAGAAACCACAUAAUCUUUUUAUUUGGACCUUGCAU ....(((((----........)))))...............((((((((((((.....))))).....(((.((((.....)))).)))..))))))) ( -21.60) >DroSim_CAF1 75133 98 + 1 GUUCUAUGUUUUGUUUUUUUUUAACAUUAAGCCAACUCAAUGUGCAGGGCCGGAAAUGCUGGCAGAAACCACAUAAUCUUUUUAUUUGGACCUCGCAU (((..(((((..(......)..)))))..))).......(((((.((((((((.....))))).....(((.((((.....)))).))).)))))))) ( -23.10) >DroEre_CAF1 73113 75 + 1 GUUU-------------UA----------AGCCAACUUAAUGUGCAGGGCCAGAAAUGCUGGCAGAAACCACAUAAUCUUUUUAUUUGGAAAUGGCAU ....-------------..----------.((((.....(((((....(((((.....)))))......)))))..(((........)))..)))).. ( -19.20) >consensus GUUCUAUGU____UUUUUUUUUAACAUUAAGCCAACUCAAUGUGCAGGGCCAGAAAUGCUGGCAGAAACCACAUAAUCUUUUUAUUUGGACAUCGCAU .........................................((((...(((((.....))))).....(((.((((.....)))).))).....)))) (-15.05 = -15.05 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:35 2006