Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,368,180 – 13,368,295 |
Length | 115 |
Max. P | 0.685185 |
Location | 13,368,180 – 13,368,295 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 86.16 |
Mean single sequence MFE | -36.17 |
Consensus MFE | -23.11 |
Energy contribution | -24.30 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.24 |
Mean z-score | -2.09 |
Structure conservation index | 0.64 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685185 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13368180 115 + 20766785 AUGUACCAUCCGCCUUAUUUGGGAUGCAGUUCCUCCUCCUGCUUCUUCUGACC---UCAUCUGCGUAUUCAAAUGAAGGGAAGAAGGGGCUUCAGAGGAACCUCUACGUAACGGACAA (((((.(((((..........)))))..(((((((.....(((((((((..((---((((.((......)).))).)))..)))))))))....)))))))...)))))......... ( -37.40) >DroSec_CAF1 66995 118 + 1 AUGUAUCUCCCACCUUAUUUGGCAUGCAGUUCCUCCUCCUGUUUCUUCUGACCUUCUCAUCCGCGUAUUCACAUGAAGGGAAGAAGGGGCUUCAGAGGAACCUCUACGUAACGGACAA .(((((...(((.......))).)))))(((((((.....((..(((((..(((((..................)))))..)))))..))....)))))))................. ( -33.67) >DroEre_CAF1 67942 118 + 1 AUGUGCUUCCCGCCUCAUUGGCGAUGCAGUUCCUCCUACUGCUUCUUCUGACCUUCUCAUCUGCUUAUUCGAAUGAAGGGAAGAAAGGGCUUCAGAGGACCCUCUACAUAACGGACAA .(((.(....((((.....))))(((.((.(((((.....(((..((((..(((((...((.........))..)))))..))))..)))....)))))....)).)))...).))). ( -35.00) >DroYak_CAF1 69174 118 + 1 AUGUGCUUCCCGCCUCAUCGGGGAUGCAGUUCCUCCUACUGUUGCUGCUGAGCUUCUCAUCUGCUUAUUCAAAUAAAGGGCAGGAGGAGCUUCAGAGGAACCUCUACAUAACGGACAA ((((((((((((......)))))).)).(((((((.....((....)).(((((((((..((((((...........)))))))))))))))..)))))))....))))......... ( -38.60) >consensus AUGUACCUCCCGCCUCAUUGGGGAUGCAGUUCCUCCUACUGCUUCUUCUGACCUUCUCAUCUGCGUAUUCAAAUGAAGGGAAGAAGGGGCUUCAGAGGAACCUCUACAUAACGGACAA (((((...((((......))))......(((((((.....(((((((((..(((..((((.((......)).)))))))..)))))))))....)))))))...)))))......... (-23.11 = -24.30 + 1.19)
Location | 13,368,180 – 13,368,295 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 86.16 |
Mean single sequence MFE | -37.41 |
Consensus MFE | -24.85 |
Energy contribution | -26.23 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.17 |
Mean z-score | -1.57 |
Structure conservation index | 0.66 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.533609 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13368180 115 - 20766785 UUGUCCGUUACGUAGAGGUUCCUCUGAAGCCCCUUCUUCCCUUCAUUUGAAUACGCAGAUGA---GGUCAGAAGAAGCAGGAGGAGGAACUGCAUCCCAAAUAAGGCGGAUGGUACAU .((((((((.(((...(((((((((....((.(((((((.(((((((((......)))))))---))...)))))))..)).)))))))))..............)))))))).))). ( -41.03) >DroSec_CAF1 66995 118 - 1 UUGUCCGUUACGUAGAGGUUCCUCUGAAGCCCCUUCUUCCCUUCAUGUGAAUACGCGGAUGAGAAGGUCAGAAGAAACAGGAGGAGGAACUGCAUGCCAAAUAAGGUGGGAGAUACAU .(.(((........(.(((((((((....((.(((((..(((((.((((....)))).....)))))..))))).....)).))))))))).)..(((......))).))).)..... ( -34.10) >DroEre_CAF1 67942 118 - 1 UUGUCCGUUAUGUAGAGGGUCCUCUGAAGCCCUUUCUUCCCUUCAUUCGAAUAAGCAGAUGAGAAGGUCAGAAGAAGCAGUAGGAGGAACUGCAUCGCCAAUGAGGCGGGAAGCACAU ...(((...((((((....((((((...((..(((((..(((((..((.........))...)))))..)))))..))....)))))).))))))((((.....)))))))....... ( -36.70) >DroYak_CAF1 69174 118 - 1 UUGUCCGUUAUGUAGAGGUUCCUCUGAAGCUCCUCCUGCCCUUUAUUUGAAUAAGCAGAUGAGAAGCUCAGCAGCAACAGUAGGAGGAACUGCAUCCCCGAUGAGGCGGGAAGCACAU ......(((...(((((....))))).)))(((((((((..((((((((......))))))))..(((....)))....)))))))))..(((.(((((......).)))).)))... ( -37.80) >consensus UUGUCCGUUACGUAGAGGUUCCUCUGAAGCCCCUUCUUCCCUUCAUUUGAAUAAGCAGAUGAGAAGGUCAGAAGAAACAGGAGGAGGAACUGCAUCCCAAAUAAGGCGGGAAGCACAU ...((((((((((...(((((((((.......(((((((((((((((((......)))))))..)))...))))))).....))))))))))))).........))))))........ (-24.85 = -26.23 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:32 2006