Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,412,135 – 2,412,228 |
Length | 93 |
Max. P | 0.596087 |
Location | 2,412,135 – 2,412,228 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 82.08 |
Mean single sequence MFE | -23.67 |
Consensus MFE | -16.71 |
Energy contribution | -17.27 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.42 |
Mean z-score | -1.51 |
Structure conservation index | 0.71 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2412135 93 - 20766785 AAACUUAGCUGCAGAAACAACAAAUUAACUGCAGCAACACGAGUCUGAUGCAAAUGGGAGAGCCUGAGCCAAAGCCAUGUGGCUGGUGACUAG .......(((((((..............)))))))......((((..........(((....)))..((((..(((....))))))))))).. ( -24.74) >DroSec_CAF1 68519 93 - 1 AAACUUAGCUGCAGAAACAACAAAUUAACUGCAGCAACACGAGUCUGAUGCAAAUGGGCGAGCCUGAGCCAAAGCCAUGUGGCUGGUGACUUG .......(((((((..............)))))))....((((((..........(((....)))..((((..(((....))))))))))))) ( -28.44) >DroSim_CAF1 25627 93 - 1 AAACUUAGCUGCAGAAACAACAAAUUAACUGCAGCAACACGAGUCUGAUGCAAAUGGGCGAGCCUGAGCCAAAGCCAUGUGGCUGGUGACUUG .......(((((((..............)))))))....((((((..........(((....)))..((((..(((....))))))))))))) ( -28.44) >DroEre_CAF1 24583 93 - 1 AAACUUAGCUGCAGAAACAACAAAUUAACUGCAGCAACACGGAUCUGAUGCAAAUGGGCGAGCCUGAGCCAAAGCCAUGUGGUUGGUGACGCG .......(((((((..............)))))))..(((.((((..(((......(((........))).....)))..)))).)))..... ( -25.44) >DroYak_CAF1 24906 93 - 1 AAACUUAGCUGCAGAAACCACAAAUUAACUGCAGUAACACGAAUCUGAUGCAAAUGGGCGAGCCUGAGCCAAAGCCACGAGACUAGAGACGUG .......(((((((..............)))))))..((((..((((.........(((..((....))....))).......))))..)))) ( -20.83) >DroAna_CAF1 17458 85 - 1 ---CUUAA---AAAAAAGAAGACUUUAAUUGCAACAACA-GAGCUUGAUGCAAAACUUAAACUUUGAAACGCGGCCAUGUGGCUCGUCA-GCG ---.....---.........(((.....(((((.(((..-....))).)))))...................((((....)))).))).-... ( -14.10) >consensus AAACUUAGCUGCAGAAACAACAAAUUAACUGCAGCAACACGAGUCUGAUGCAAAUGGGCGAGCCUGAGCCAAAGCCAUGUGGCUGGUGACGUG .......(((((((..............)))))))..(((.((((....((.....(((........)))...)).....)))).)))..... (-16.71 = -17.27 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:47 2006