| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,366,058 – 13,366,158 |
| Length | 100 |
| Max. P | 0.816248 |
| Location | 13,366,058 – 13,366,158 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 88.40 |
| Mean single sequence MFE | -44.35 |
| Consensus MFE | -36.79 |
| Energy contribution | -38.90 |
| Covariance contribution | 2.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.816248 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13366058 100 - 20766785 UUGCUGGAACUGAUGACCGGUGGCCACUGAAGUGGCGGCUGCAACGGCGGCGGCCACAACGUGCUGGAAGUGGUGCUGCUGGUGAUUUCCAGUGGUGAUC (..(((((...(((.(((((..((.(((...(((((.(((((....))))).))))).....((.....)))))))..))))).))))))))..)..... ( -47.10) >DroSec_CAF1 64881 100 - 1 CUGCUGGAACUGAUGACCGGUGGCCACUGAAGUGGCGGCUGCAACGGCGGCAGCUACAACGUGUUGGAAGUGGUGCUGCUGGUGAUUUCCAGUGGUGAUC (..(((((...(((.(((((..((((((...(((((.(((((....))))).)))))..(......).))))..))..))))).))))))))..)..... ( -43.90) >DroSim_CAF1 67809 100 - 1 CUGCUGGAACUGAUGACCGGUGGCCACUGAAGUGGCGGCUGCAACGGCGGCGGCCACAACGUGCUGGAAGUGAUGCUGCUGGUGAUUUCCAGUGGUGAUC (..(((((...(((.(((((..((((((...(((((.(((((....))))).)))))..(......).))))..))..))))).))))))))..)..... ( -48.00) >DroEre_CAF1 65782 100 - 1 CUGCUGGAACUGGUGACCGGUGGCCACUGAAGUGGCGGCUGCAACGGCGGCGGCCACAACGUGCUGGAAGUGGUGCUGCUGGUGAUUCCCAGUGGUAAUC (..((((....(((.(((((..((.(((...(((((.(((((....))))).))))).....((.....)))))))..))))).))).))))..)..... ( -45.40) >DroYak_CAF1 67020 100 - 1 CUGCUGGAACUGGUGACCGGUGGCCACUGAAGUGGCGGCUGCAACGGCGGCGGCCACAACGUGCUGGAAGUGGUGCUGCUGGUGAUUGCCAGUGGUGAUC (..((((....(((.(((((..((.(((...(((((.(((((....))))).))))).....((.....)))))))..))))).))).))))..)..... ( -46.50) >DroAna_CAF1 64697 87 - 1 -UGCUGGAGUUGCUGUCCAGUGGCCACAGAGGUGGCGGCGGCUACGGCGGCGGCGACAACGUGCUGGAACUGAUGCUGC------------GUGGUGGUU -.((((((.......))))))((((((....((.((.((.((....)).)).)).)).((((((..........)).))------------)).)))))) ( -35.20) >consensus CUGCUGGAACUGAUGACCGGUGGCCACUGAAGUGGCGGCUGCAACGGCGGCGGCCACAACGUGCUGGAAGUGGUGCUGCUGGUGAUUUCCAGUGGUGAUC (((((((....(((.(((((..((((((...(((((.(((((....))))).)))))..(......).))))..))..))))).))).)))))))..... (-36.79 = -38.90 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:28 2006