| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,359,133 – 13,359,238 |
| Length | 105 |
| Max. P | 0.961576 |
| Location | 13,359,133 – 13,359,238 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 84.64 |
| Mean single sequence MFE | -24.95 |
| Consensus MFE | -19.51 |
| Energy contribution | -21.82 |
| Covariance contribution | 2.31 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.78 |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.961576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13359133 105 - 20766785 AACUAUAAAUUAGGCACUAACGAUAGGCUAAAGUUUGUUGUUAGUUGCUAUUUAUAGUUUUUUUU--UGUUUUAAGCACGUGUUCGUUCUGGCAACUUUUCCGGCUU ((((((((((..((((((((((((((((....)))))))))))).))))))))))))))......--......(((((((....)))...(....).......)))) ( -29.00) >DroSec_CAF1 58297 101 - 1 AACUAUAAAUUAGGCACUAACGAUAGGCUAAAGUUUGUUGUUAGUUGCUAUUUAUA------UUUUUUUUUUCAAGCACGUGUUCGGGCUGGCAACUUUUCCGGCUU ...(((((((..((((((((((((((((....)))))))))))).)))))))))))------.......................(((((((........))))))) ( -27.80) >DroSim_CAF1 60234 107 - 1 AACUAUAAAUUAGGCACUAACGAUAGGCUAAAGUUUGUUGUUAGUUGCUAUUUUUAGUUUUUUUUUUUUUUUCAAGCACGUGUUCGCGCUGACAACUUUUCCGGCUU (((((.((((..((((((((((((((((....)))))))))))).)))))))).)))))............(((.((.((....)).)))))............... ( -26.10) >DroYak_CAF1 59898 97 - 1 AGUUAUAAAUUAGGCUCAAACGAUGGUCUAAAAUUUGUUGUUCGUUGCUAUUUCUAGUUU----------UUUAAGCACUUGUUUGCGCUGGCAACUUUUCCGGCUU ..(((.(((((((((.(.(((((..(........)..))))).)..)).....)))))))----------..)))(((......)))(((((........))))).. ( -16.90) >consensus AACUAUAAAUUAGGCACUAACGAUAGGCUAAAGUUUGUUGUUAGUUGCUAUUUAUAGUUU__UUU__UUUUUCAAGCACGUGUUCGCGCUGGCAACUUUUCCGGCUU ((((((((((..((((((((((((((((....)))))))))))).))))))))))))))............................(((((........))))).. (-19.51 = -21.82 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:25 2006