Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,352,919 – 13,353,012 |
Length | 93 |
Max. P | 0.653244 |
Location | 13,352,919 – 13,353,012 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 84.99 |
Mean single sequence MFE | -14.06 |
Consensus MFE | -11.38 |
Energy contribution | -11.58 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.81 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653244 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13352919 93 + 20766785 CCCCCC-UCCACCUUUUGUGCCA----CCCCCUUGGUCAGCUGCCUUCCUGCAGCAGCUUCCAUCGCUCAAUUGCUGAUUUUUAAUUACAAAUGCAAA ......-.......((((((...----......(((..((((((.........)))))).)))..((......))...........))))))...... ( -15.40) >DroSec_CAF1 52153 90 + 1 ---CCC-CCCACCUUUUGUGCCA----CCCCCUUGGUCAGCUGCCUUCCUGCAGCAGCUUCCAUCGCUCAAUUGCUGAUUUUUAAUUACAAAUGCAAA ---...-.......((((((...----......(((..((((((.........)))))).)))..((......))...........))))))...... ( -15.40) >DroSim_CAF1 54099 91 + 1 ---CCCCCCCACCUUUUGUGCCA----CCCCCUUGGUCAGCUGCCUUCCUGCAGCAGCUUCCAUCGCUCAAUUGCUGAUUUUUAAUUACAAAUGCAAA ---...........((((((...----......(((..((((((.........)))))).)))..((......))...........))))))...... ( -15.40) >DroEre_CAF1 52732 71 + 1 ---------------------------CCCCCUUGGCCACCUGCCUUCCUGCAGCAGCUUCCAUCGCUCAAUUGCUGAUUUUUAAUUACAAAUGCAAA ---------------------------.......(((.....)))....((((.((((...............))))...............)))).. ( -9.25) >DroYak_CAF1 53498 88 + 1 ----CU-UCCA-----UGUGCCACCACCCCCCCUGGUCAGCUGCCUUCCUGCAGCAGCUUCCAUCGCUCAAUUGCUGAUUUUUAAUUACAAAUGCAAA ----..-....-----((.((.((((.......))))..(((((......)))))..........)).)).((((..................)))). ( -14.87) >consensus ___CCC_CCCACCUUUUGUGCCA____CCCCCUUGGUCAGCUGCCUUCCUGCAGCAGCUUCCAUCGCUCAAUUGCUGAUUUUUAAUUACAAAUGCAAA .................................(((..((((((.........)))))).)))..((....(((.((((.....)))))))..))... (-11.38 = -11.58 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:23 2006