| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,342,713 – 13,342,833 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 13,342,713 – 13,342,833 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.50 |
| Mean single sequence MFE | -48.07 |
| Consensus MFE | -29.27 |
| Energy contribution | -30.47 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13342713 120 + 20766785 CAACAGCACCAUUCGCAGGAUGGCAAGAGCAAUGGCGGAGCAACGCCACUCUAUGCCAAAGCCAUUACGGCGGCGGGUCUAACGGUGGAUUUGCCAAGUCCGGAUUCGGGCAUUGGUACG ......((((((((((....(((((((((...(((((......))))))))).)))))..(((.....))).)))))).....))))....(((((((((((....))))).)))))).. ( -48.70) >DroPse_CAF1 39320 117 + 1 CAACACCAUCACCCGCAGGACGGCAAGGGCGGCGGCGG---GACGCCACUCUAUGCCAAGGCCAUCACGGCGGCGGGACUCACCGUGGAUCUGCCCAGUCCCGACUCGGGCAUCGGCACG ...........(((((.....((((((((.((((....---..)))).)))).))))...(((.....))).))))).......((.((..((((((((....))).))))))).))... ( -49.90) >DroGri_CAF1 46854 108 + 1 CAGCAGGAACAGUCG------GGCAAAAGCGGCG------GUACUCCACUAUAUGCCAAGGCUAUAACGGCGGCGGGUCUGACCGUCGAUUUGCCCAGUCCCGAUUCGGGCAUUGGCACG ...........((((------((((((..(((((------((.....(((...((((...........))))...)))...))))))).))))))).(.((((...)))))...)))... ( -38.10) >DroMoj_CAF1 49811 108 + 1 CAACAGGAACAGUCG------GGCAAGAACGGUG------GGACGCCGCUCUAUGCCAAGGCUAUAACGGCGGCGGGUCUCACCGUGGACUUGCCCAGUCCCGAUUCGGGCAUUGGCACG ...........((((------((((((.((((((------((((((((((.(((((....)).)))..))))))..))))))))))...))))))).(.((((...)))))...)))... ( -52.50) >DroAna_CAF1 42451 120 + 1 CAACAGCACCACCCGCAGGACGGCAAGGGCGGUGGUGGCGCCACGCCCCUCUACGCCAAAGCGAUUACGGCAGCCGGUCUGACAGUGGAUCUACCAAGUCCGGACUCGGGCAUUGGAACA ........((((...(((..((((..(((((.(((.....))))))))......(((...........))).))))..)))...)))).....(((((((((....))))).)))).... ( -49.30) >DroPer_CAF1 39588 117 + 1 CAACACCAUCACCCGCAGGACGGCAAGGGCGGCGGCGG---GACGCCACUCUAUGCCAAGGCCAUCACGGCGGCGGGACUCACCGUGGAUCUGCCCAGUCCCGACUCGGGCAUCGGCACG ...........(((((.....((((((((.((((....---..)))).)))).))))...(((.....))).))))).......((.((..((((((((....))).))))))).))... ( -49.90) >consensus CAACAGCAACACCCGCAGGACGGCAAGAGCGGCGGCGG___GACGCCACUCUAUGCCAAGGCCAUAACGGCGGCGGGUCUCACCGUGGAUCUGCCCAGUCCCGACUCGGGCAUUGGCACG .....................((((((((.((((.........)))).)))).))))...(((.....)))(((((((((......)))))))))..((((......))))......... (-29.27 = -30.47 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:16 2006