Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,334,001 – 13,334,094 |
Length | 93 |
Max. P | 0.660401 |
Location | 13,334,001 – 13,334,094 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 91.53 |
Mean single sequence MFE | -18.65 |
Consensus MFE | -17.10 |
Energy contribution | -17.22 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.12 |
Mean z-score | -1.17 |
Structure conservation index | 0.92 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660401 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13334001 93 + 20766785 GUAACGCUCGGAAUUUGCAUA--------UAUGCAAUCAAUAUCUAUGCACAAAUUAAGACAAAUUGUCGAAAAGCCAGCUGA-AAAUCGGGCAUAUCUGAU .......(((((..(((((..--------..)))))........(((((.........(((.....)))..........(((.-....))))))))))))). ( -17.40) >DroSec_CAF1 33507 93 + 1 GUAACGCUCGGAAUUUGCAUA--------UAUGCAAUCAAUAUCUAUGCACAAAUUAAGACAAAUUGUCGAAAAGCCUGCCGA-AAAUCGGGCAUAUCUGAU .......(((((..(((((..--------..)))))........(((((.........(((.....)))..........(((.-....))))))))))))). ( -19.60) >DroSim_CAF1 35340 93 + 1 GUAACGCUCGGAAUUUGCAUA--------UAUGCAAUCAAUAUCUAUGCACAAAUUAAGACAAAUUGUCGAAAAGCCUGCUGA-AAAUCGGGCAUAUCUGAU .......(((((...((((((--------.(((.......))).))))))........(((.....))).....(((((.(..-..).)))))...))))). ( -19.90) >DroEre_CAF1 34214 93 + 1 GUAACGCUCGGAAUUUGCAUA--------UAUGCAAUCAAUAUCUAUGCACAAAUUAAGACAAAUUGUCGAAAAGCCCGCUGA-AAAUCGGGCAUAUCUGAU .......(((((...((((((--------.(((.......))).))))))........(((.....))).....(((((.(..-..).)))))...))))). ( -22.10) >DroYak_CAF1 34872 93 + 1 GUAACGCUCGGAAUUUGCAUA--------UAUGCAAUCAAUAUCUAUGCACAAAUUAAGACAAAUUGUCGAAAAGCCUGCUGA-AAAUCGGGCAUAUCUGAU .......(((((...((((((--------.(((.......))).))))))........(((.....))).....(((((.(..-..).)))))...))))). ( -19.90) >DroAna_CAF1 33421 102 + 1 GUAAAGCUUGGAAUUUGCAUACGUUUGGAUUUGCAAUCAAUAACCACGAACAAAUUAAGACAAAUUGUCGAAGAGCUGGCUAAAAAAUUGGACAUAUCUGAU ....(((((..((((((....(((..((..(((....)))...)))))..))))))..(((.....)))...))))).........((..((....))..)) ( -13.00) >consensus GUAACGCUCGGAAUUUGCAUA________UAUGCAAUCAAUAUCUAUGCACAAAUUAAGACAAAUUGUCGAAAAGCCUGCUGA_AAAUCGGGCAUAUCUGAU .......(((((..(((((((........)))))))........(((((.........(((.....)))..........((((....)))))))))))))). (-17.10 = -17.22 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:12 2006