Locus 4038

Sequence ID 2R_DroMel_CAF1
Location 13,331,686 – 13,331,784
Length 98
Max. P 0.985436
window6507

overview

Window 7

Location 13,331,686 – 13,331,784
Length 98
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 91.99
Mean single sequence MFE -26.64
Consensus MFE -20.64
Energy contribution -20.32
Covariance contribution -0.32
Combinations/Pair 1.17
Mean z-score -2.90
Structure conservation index 0.77
SVM decision value 2.01
SVM RNA-class probability 0.985436
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13331686 98 + 20766785
ACUUCCUUUUCCUAUUGCAUAAAUGUGCAAAAGCCGCAUAUACCCCGUACAUUCUGCCAGUACCGGGUGUGAAA--AAAAGCUUCAUGGGAAAUAAAUAA
.......(((((((((((((....))))))((((....(((((((.((((.........)))).)))))))...--....))))..)))))))....... ( -26.20)
>DroSec_CAF1 31246 100 + 1
ACUUCCUUUUCCUAUUGCAUAAACGCGCAAAAGCCGAGUAUACCCCGUGCAUUCUGCAGGUACCGGGUGUGAAAAAAAAAGCUUCAUGGGAAAUAAAUAA
.......((((((((.((.....((.((....))))..(((((((.((((.........)))).))))))).........))...))))))))....... ( -25.80)
>DroSim_CAF1 33125 98 + 1
ACUUCCUUUUCCUAUUGCAUAAAUGUGCAAAAGCCGCGUAUACCCCGUGCAUUCUGCCAGUACCGGGUGUGAAA--AAAAGCUUCAUGGGAAAUAAAUAA
.......(((((((((((((....))))))((((....(((((((.((((.........)))).)))))))...--....))))..)))))))....... ( -27.30)
>DroEre_CAF1 31958 95 + 1
ACUUCCUUUUCCUAUUGCAUAAAUGUGAAAUAGCCAAGCAUAC-CCGUGCAUUCUGC-AGUACCGGGUGUGAAA---AAAGCUUCAUGGGAAAUAAAUAA
.......((((((((..((....))..)...(((....(((((-((((((.......-.))).))))))))...---...)))...)))))))....... ( -24.40)
>DroYak_CAF1 32508 96 + 1
ACUUCCUUUUCCUAUUGCAUAAAUGCGAAAAAGCCAAGUAUAC-CCGUGCAUUCUGCCAGUGCCGGGUGUGAAA---AAAGCUUCAUGGGAAAUAAAUAA
.......((((((((((((....)))))..((((....(((((-(((.(((((.....)))))))))))))...---...))))..)))))))....... ( -29.50)
>consensus
ACUUCCUUUUCCUAUUGCAUAAAUGUGCAAAAGCCGAGUAUACCCCGUGCAUUCUGCCAGUACCGGGUGUGAAA__AAAAGCUUCAUGGGAAAUAAAUAA
.......((((((((.((......((......))....(((((((.((((.........)))).))))))).........))...))))))))....... (-20.64 = -20.32 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:11 2006