Locus 4037

Sequence ID 2R_DroMel_CAF1
Location 13,327,960 – 13,328,065
Length 105
Max. P 0.949971
window6506

overview

Window 6

Location 13,327,960 – 13,328,065
Length 105
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 78.05
Mean single sequence MFE -14.78
Consensus MFE -5.66
Energy contribution -6.86
Covariance contribution 1.20
Combinations/Pair 1.13
Mean z-score -2.41
Structure conservation index 0.38
SVM decision value 1.40
SVM RNA-class probability 0.949971
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13327960 105 + 20766785
GUACAUAUAUGUAUA---UGUAU---ACCCACACCCC-UAUAUAUCUUAUAUAGCUCUGCUUACUUUCACUUUACCCGAUCAUAUUAAGUUUCUGAGCUGUAAAACAUAUUU
((((((((....)))---)))))---...........-...((((.((.((((((((.(((((...((.........))......)))))....)))))))).)).)))).. ( -17.20)
>DroGri_CAF1 29798 98 + 1
GCACACACACUUACAUAUUGUCCGGCAGGCACACCUC-AU------UUAU------UUACUUACUUUCACUUUAG-UGAUCAUAUUAAAUUUCCAAGCUGCAAAACAUAUUU
((((..............(((((....)).)))....-..------....------..........((((....)-))).................).)))........... (  -9.00)
>DroSim_CAF1 28945 105 + 1
AUACAUAUAUGUAUA---UGUAU---ACCCACACCCC-UAUAUAUCUUAUAUAGCUGUGCUUACUUUCACUUUACCCGAUCAUAUUAAGUUUCUGAGCUGUAAAACAUAUUU
((((((((....)))---)))))---.....(((..(-((((((...)))))))..)))...........(((((....(((...........)))...)))))........ ( -12.90)
>DroEre_CAF1 28285 100 + 1
AUACA------CAUG---UGUAU---ACCCACUCCCUGUAUAUAUCUUAUAUAGCUCUGCUUACUUUCACUUUAGCCGAUCAUAUUAAGUUUCUGAGCUGUAAAACACAUUU
.....------.(((---(((((---((.........))))........((((((((.(((((...((.........))......)))))....))))))))..)))))).. ( -16.30)
>DroYak_CAF1 28633 100 + 1
AUACA------UAUA---UGCAU---ACCCACUCCCUGCAUAUAUCUUAUAUAGCUCUGCUUACUUUCACUUUACCCGAUCAUAUUAAGUUUCUGAGCUGUAAAACAUAUUU
....(------((((---((((.---..........)))))))))....((((((((.(((((...((.........))......)))))....)))))))).......... ( -18.50)
>consensus
AUACA_A_A__UAUA___UGUAU___ACCCACACCCC_UAUAUAUCUUAUAUAGCUCUGCUUACUUUCACUUUACCCGAUCAUAUUAAGUUUCUGAGCUGUAAAACAUAUUU
.................................................((((((((.(((((...((.........))......)))))....)))))))).......... ( -5.66 =  -6.86 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:10 2006