Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,326,219 – 13,326,309 |
Length | 90 |
Max. P | 0.773560 |
Location | 13,326,219 – 13,326,309 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 79.34 |
Mean single sequence MFE | -25.72 |
Consensus MFE | -16.52 |
Energy contribution | -16.80 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.06 |
Mean z-score | -1.69 |
Structure conservation index | 0.64 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13326219 90 - 20766785 GUCCAUAUGCGGAAACGCAAUUUUGUCGUUAUUUAUGGACCUUGCCGCACAUGCAACAUGCACGCCGG--CCAAACGAACC--AGCGAUGUUGC------ (((((((((((....))))..............)))))))............(((((((...(((.((--.........))--.))))))))))------ ( -26.13) >DroPse_CAF1 23662 74 - 1 GUCCAUAUGCGGAAACGCAAUUUUGUCGUUAUUUAUGGACCUUGCCGCGCAUGCAACAUGCAA--CGG------ACGACUC--U---------------- (((((((((((....))))..............))))))).((((((.(((((...)))))..--)))------.)))...--.---------------- ( -23.43) >DroEre_CAF1 26519 90 - 1 GUCCAUAUGCGGAAACGCAAUUUUGUCGUUAUUUAUGGACCUUGCCGCACAUGCAACAUGCACGCCGG--CCAAACGAACC--AGCCAUGUUGU------ (((((((((((....))))..............)))))))............((((((((...((.((--.........))--.))))))))))------ ( -25.13) >DroWil_CAF1 32911 90 - 1 AGCCAUAUGCGGAAACGCAAUUUUGUCGUUAUUUAUGGACCUUGCCGCACAUGCAACAUGCACGCUGA--CCGUAGCAACU--GAUGCUGUUGC------ .((....((((....)))).................((......))))....((((((.((((((((.--...))))....--).)))))))))------ ( -21.50) >DroAna_CAF1 25776 100 - 1 GUCCAUAUGCGGAAACGCAAUUUUGUCGUUAUUUAUGGACCUUGCCGCGCAUGCAACAUGCACGCUGGACCCAAACGUACCACAGCGAUGUUGCAGCAGC (((((((((((....))))..............)))))))......((((.((((((((...(((((.((......))....))))))))))))))).)) ( -34.73) >DroPer_CAF1 23794 74 - 1 GUCCAUAUGCGGAAACGCAAUUUUGUCGUUAUUUAUGGACCUUGCCGCGCAUGCAACAUGCAA--CGG------ACGACUC--U---------------- (((((((((((....))))..............))))))).((((((.(((((...)))))..--)))------.)))...--.---------------- ( -23.43) >consensus GUCCAUAUGCGGAAACGCAAUUUUGUCGUUAUUUAUGGACCUUGCCGCACAUGCAACAUGCACGCCGG__CCAAACGAACC__AGCGAUGUUGC______ (((((((((((....))))..............)))))))....(((....(((.....)))...)))................................ (-16.52 = -16.80 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:09 2006