Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,315,665 – 13,315,765 |
Length | 100 |
Max. P | 0.625604 |
Location | 13,315,665 – 13,315,765 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 85.17 |
Mean single sequence MFE | -23.15 |
Consensus MFE | -17.23 |
Energy contribution | -17.35 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.31 |
Mean z-score | -1.57 |
Structure conservation index | 0.74 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625604 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13315665 100 + 20766785 CAUUUUACAUAAAUAUUUUACAUUGCGUAGAAUGUCUAGUGCUUCAGUGAAAACUAGCGCCCGCUGCUUUACGUUCUUAACCACAGUUCCACGCGUGCGC .....(((.((.(((((((((.....))))))))).)))))....(((....))).((((.(((((....((.............))..)).))).)))) ( -18.82) >DroSim_CAF1 16271 100 + 1 CAUUUUACAUAGAUAUUUUACAUUGCGUAGAAUGUCAAGUGCUUCAGUGUAAACUGGUGCCCACUGCUUUACGUUCUUAACCACAGUUCCACGCGUGCAC ...........((((((((((.....))))))))))..((((....((((.(((((.........((.....)).........)))))..))))..)))) ( -23.17) >DroEre_CAF1 15418 100 + 1 AUUUUUACAUAGACAUUUGACAUUACGUAGAAUGUCAAGUAUAUCGAUGUAAACUAGUGCUCGCUGCUUUACGUUCUUAACCGCAGUACCACGCGUGCGC ...(((((((.((.((((((((((......))))))))))...)).)))))))...((((.(((((...(((((........)).))).)).))).)))) ( -24.50) >DroYak_CAF1 15560 100 + 1 AAUUAUACAAAUACAUUCUACAUUACGUAGAAUGUCAAGUGUAUCGCUGUAAACUAGUGCUCACUGCUUUACGUUCUCAACCGCAGCACCACGCGUGCGC ....(((((...(((((((((.....)))))))))....)))))....(((((.((((....)))).))))).........((((((.....)).)))). ( -26.10) >consensus AAUUUUACAUAGACAUUUUACAUUACGUAGAAUGUCAAGUGCAUCAGUGUAAACUAGUGCCCACUGCUUUACGUUCUUAACCACAGUACCACGCGUGCGC ...........((((((((((.....))))))))))..(((....((((((((.((((....)))).))))))))......))).((((.....)))).. (-17.23 = -17.35 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:05 2006