Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,314,735 – 13,314,829 |
Length | 94 |
Max. P | 0.543591 |
Location | 13,314,735 – 13,314,829 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 84.79 |
Mean single sequence MFE | -18.50 |
Consensus MFE | -15.83 |
Energy contribution | -15.17 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.17 |
Mean z-score | -1.39 |
Structure conservation index | 0.86 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543591 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13314735 94 - 20766785 UUAUGCGGGGGUAUUCCAAAAAUAUCUCUAUAUUAAA-GA---AAAACUCAUUUGGUGUCCUUAUGCUGAGCACCUUAAGAUUUGAGAAUAAGAAAAG-------- ..(((..((((((((.....))))))))..)))....-..---....((((...((((..(.......)..))))........))))...........-------- ( -16.70) >DroSec_CAF1 14267 105 - 1 UUAUGCGGGGAUAUUGCAAAAAUAUUUCUAUAUUAAA-AAAACAAAACUUAUUUGGUGUCCUUAUGCUGAGCACCUUAAGAUUUGAGAAUAAUAAUAGAAGCUAAU ....((((..(((((.....)))))..))........-....((((.((((...((((..(.......)..)))).)))).))))...............)).... ( -20.60) >DroSim_CAF1 15332 95 - 1 UUAUGAGGGGAUAUUGCAAAAAUAUUUCUAUAUAAAAAAAAACAAAACUCAUUUGGUGUCCUUAUGCUGAGCACCUUAAGAUUUGAGAAUAAGAA----------- (((((.((..(((((.....)))))..)).)))))............((((...((((..(.......)..))))........))))........----------- ( -18.20) >consensus UUAUGCGGGGAUAUUGCAAAAAUAUUUCUAUAUUAAA_AAAACAAAACUCAUUUGGUGUCCUUAUGCUGAGCACCUUAAGAUUUGAGAAUAAGAA_AG________ ......(((((((((.....)))))))))..................((((...((((..(.......)..))))........))))................... (-15.83 = -15.17 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:04 2006