Locus 403

Sequence ID 2R_DroMel_CAF1
Location 2,410,908 – 2,411,016
Length 108
Max. P 0.576217
window791

overview

Window 1

Location 2,410,908 – 2,411,016
Length 108
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 91.51
Mean single sequence MFE -35.83
Consensus MFE -30.99
Energy contribution -32.92
Covariance contribution 1.94
Combinations/Pair 1.06
Mean z-score -1.42
Structure conservation index 0.86
SVM decision value 0.09
SVM RNA-class probability 0.576217
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2410908 108 - 20766785
GCGGAAGUACCUAGCCAUUUCCCAUCACGGCUCGUUACCCAUUCGCCCCGUUGGCCGGGGAAUCGAAGUAAUGGCAAAGUGGAAUUGGUAAGGAGCGAGCACAAAGUG
((....((.(((.((((.((((....((.((.((((((...(((((((((.....)))))...))))))))))))...)))))).)))).))).))..))........ ( -36.90)
>DroSec_CAF1 67415 108 - 1
GCGAAAGUACCUAGCCAGUUCCCAGCACAGCUCGUUACCCAUUCGCCCCGUUGGCCGGGGAAUCGAAGUAAUGGCAAAGUGGAAUUGGUAAGGAGCGAGCACAAAGUG
((....((.(((.(((((((((..((...((.((((((...(((((((((.....)))))...))))))))))))...))))))))))).))).))..))........ ( -39.70)
>DroSim_CAF1 24472 102 - 1
GCGAAAGUACCUAGCCAGUUCCCAGCACAGCU------UCAUUCGCCCCGUUGGCCGGGGAAUCGAAGUAAUGGCAAAGUGGAAUUGGUAAGGAGCGAGCACAAAGUG
((....((.(((.((((((((((.((.(((((------((.....(((((.....)))))....)))))..))))...).))))))))).))).))..))........ ( -37.70)
>DroYak_CAF1 23752 108 - 1
GCGAAAGUACCCAGCCAGUUCCCAUCACAGCUCGUUACCCAUUCGCCCCGUUGGCUGGGGAAUCGAAGUAAUGGCAAAGUGGAAAUGCUAGGAAGCGAGCACAAAGCG
((....)).((.(((..(((.((((....((.((((((...(((((((((.....)))))...))))))))))))...)))).)))))).))......((.....)). ( -29.00)
>consensus
GCGAAAGUACCUAGCCAGUUCCCAGCACAGCUCGUUACCCAUUCGCCCCGUUGGCCGGGGAAUCGAAGUAAUGGCAAAGUGGAAUUGGUAAGGAGCGAGCACAAAGUG
((....((.(((.(((((((((.......((.((((((...(((((((((.....)))))...)))))))))))).....))))))))).))).))..))........ (-30.99 = -32.92 +   1.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:44 2006