| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,295,039 – 13,295,156 |
| Length | 117 |
| Max. P | 0.683892 |
| Location | 13,295,039 – 13,295,156 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.32 |
| Mean single sequence MFE | -37.88 |
| Consensus MFE | -22.16 |
| Energy contribution | -22.87 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.49 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.683892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13295039 117 - 20766785 AAUUCGCUGCGAUGGCGAUCUCAAAGUGUGCAACUACUGCUCCAAGAUAGUGCUCACAUUCCUGAAGUCCUCAAGCUCUGAGAUGGGACAGGAUAUGCAGGAGCUGCAGCAGCACUU .....(((((..((((.........(((.(((.(((((......)).)))))).)))..(((((..(((((....(((......)))..)))))...)))))))))..))))).... ( -40.30) >DroVir_CAF1 24290 117 - 1 AAUACGCUGUGAGGGCGAUUUGAAGGUGUGCAAUUACUGUUCCAAGAUUGUGCUCACCUCACUCAAAUCCUCCAGCUCGAACAUCGGCGGAGAUUUGCAGGCACUACAGCAGCAUCU .....(((((.((.((((((((((((((.(((....((......))....))).)))))...)))))))((((.((.((.....))))))))........)).))...))))).... ( -40.40) >DroWil_CAF1 52380 117 - 1 AGUACGUUGUGAGGGAGAUCUGAAAGUGUGCAACUAUUGUUCCAAAAUAGUGUUGACCUUCCUGAAGUCAUCAAGCUCGACCAUUGGCCAAGAUUUGCAAGCUUUGCAACAGCAUCU .....(((((((......))(((((((.(((((...(((..((((....(.(((((.(((..((....))..))).)))))).)))).)))...))))).))))).))))))).... ( -24.50) >DroMoj_CAF1 24778 117 - 1 UAUACGCUGCGAGGGUGACUUGAAGGUGUGCAAUUACUGUUCCAAGAUUGUGCUCACUUCACUGAAGUCCUCCAGCACGAACAUGGAUGAGAAUAUGCAGGCAUUGCAGCAGCAUUU .....(((((((((....)).....((.(((((((.((..((((.(.(((((((.(((((...))))).....))))))).).))))..))))).)))).)).)))))))....... ( -38.10) >DroAna_CAF1 21980 117 - 1 UAUACGCUGCGAUGGUGAUCUGAAGGUGUGCAACUACUGCUCCAAAAUAGUGCUCACUUUUCUCAAGUCCUCCAGUUCGGAUAUGGGCCAGGAUCUUCAGGCGCUGCAGCAGCAUUU .....(((((..(((((.((((((((((.(((.(((.(.......).)))))).).(((..((((.((((........)))).))))..)))))))))))))))))..))))).... ( -39.00) >DroPer_CAF1 22693 117 - 1 AGUCCGCUGCGACGGGGACCUCAAGGUGUGCAACUACUGUUCCAAGAUAGUGCUCACCUUUCUGAAGUCCUCCAGUUCGGACAUUGGCCAGGAUCUUCAGGCACUGCAGCAGCAUCU .....(((((..(((.......((((((.(((.(((((......)).)))))).))))))((((((((((((((((......)))))..)))).)))))))..)))..))))).... ( -45.00) >consensus AAUACGCUGCGAGGGCGAUCUGAAGGUGUGCAACUACUGUUCCAAGAUAGUGCUCACCUUACUGAAGUCCUCCAGCUCGAACAUGGGCCAGGAUAUGCAGGCACUGCAGCAGCAUCU .....(((((...((((.((((((((((.(((.(((((......)).)))))).))))))......(((((...(((........))).)))))...))))))))...))))).... (-22.16 = -22.87 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:56 2006