Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,287,320 – 13,287,410 |
Length | 90 |
Max. P | 0.531677 |
Location | 13,287,320 – 13,287,410 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 73.55 |
Mean single sequence MFE | -33.00 |
Consensus MFE | -18.21 |
Energy contribution | -18.46 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.30 |
Mean z-score | -1.60 |
Structure conservation index | 0.55 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13287320 90 + 20766785 GGAGUUUUGGGAAGGAGGUGGGCCUCCAUAAGACCACGACCGGUUGCAAAAGGCAGCCAGCG-AAGGCAUUCCUCCACAUCCACCUC------------------CAUU ((((...((((..(((((...((((.(....(........)((((((.....))))))...)-.))))...)))))...)))).)))------------------)... ( -33.50) >DroSec_CAF1 14822 102 + 1 GGAGUUUCGGGAAGGAGGUGGGCCGCCAUAAGACCGCGACCGGUUGCAAGAGGCAGCCAGCG-AAGGCAUUCCUCCACAUCCACAUC------CACUGCCAUUUCCAUU (((......(((.(((((..(((.(((....(((((....)))))......))).))).((.-...))...)))))...)))...))------)............... ( -34.20) >DroSim_CAF1 14850 102 + 1 GGAGUUUCGGGAAGGAGGUGGGCUGCCAUAAGACCGCGACCGGUUGCAAAAGGCAGCCAGCG-AAGGCAUUCCUCCACAUCCACAUC------CACCGCCAUUUUCAUU (((......(((.(((((..(((((((....(((((....)))))......))))))).((.-...))...)))))...)))...))------)............... ( -38.80) >DroEre_CAF1 14999 73 + 1 AGAGUUUCGGAAAGGAGGCG----G-------------GCCGGCUCUAAAAGGCAGCCAGUG-AAGGCAUUCCACCACAUCCACCUC------------------CAUU .............(((((.(----(-------------(..((((((....)).)))).(((-..((....))..))).))).))))------------------)... ( -23.60) >DroYak_CAF1 14941 105 + 1 GGAGUUUCGGGAAGGAGGCC----GCCAUAAGACGGCGCCCGGUUCCAAAAGGCAGCCAGUGGAAGGCAUUCCACCACAUCCACCUUCACAUCCACCUCCUCGUCUAUU ((((.....((((((.((.(----(((.......)))).))((((((....)).)))).((((((....))))))........))))).)......))))......... ( -34.90) >consensus GGAGUUUCGGGAAGGAGGUGGGC_GCCAUAAGACCGCGACCGGUUGCAAAAGGCAGCCAGCG_AAGGCAUUCCUCCACAUCCACCUC______CAC__CC___U_CAUU (((((...((((.((..((((............))))..))((((((.....)))))).((.....)).))))...)).)))........................... (-18.21 = -18.46 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:53 2006